Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151193g00009 ATGGCGACGGAGACGGCAACGGGGGCGGAGGAATCAGAACTTAAAACGTATTGGTGCCATGAATGCGACATGAGCGTCGCCCTCTCCTCTTCCTCTTCCTCTTCACCTTCACCTTCCCCTCTCCTCTGTCCGCACTGCCACACCCACTTCCTAGAACTCATGGACTCACCTTCCCTAAACGACGCCGTTTCACCACTCTCCTCTCTCTCCCTATTTGATTCCCCCTTCTTTCACCGCCTAATCCATCACCACCTCATTTCCAACTCCAACACCACCGACACTCAAAACGACGACGTCGTTTTCGAGGACCCACTCTCTTTACTCTCGCCACCGCTAATTCCCTCCAAAACGGCGTCGTCCAAGTCCTCCGTAACCGCCGTCCCCGTAATTCTCGTCACCGCCGCGTTGCTCTCCCAGCTCGATCCAAACGGCGTCGTTTCGTGCGCGGTTTGCAAGGACGACATTGAAATCGACGAGGAAGCGAAGCAGCTTCCGTGTAACCACCTTTACCATTCCGATTGCATCACGCCGTGGCTCGAACTCCACGATTCGTGCCCGCTCTGCCGGTTCCGACTCTCGGCGGAGGCGGAGGAGGAGGAAGAAGATAGCTTTGATGGTGCTTTGACGTCGAGCGAGATCAGGAGTCAACTGAGGGCGGCGATGGTGAGGCTTTCCGAGCTAATGGAGGAAGAGGAGGACGATTTCTACGGGTTGAGGACCACTCTGAATCACATTGCCTCAAGGCACGGCTTGATTGGCTCCAATGGTACTTCTGTGGTGAGTGAGGAGGGTGAGGGTGGTGGTTTGGAGAATTTTTCGAGATTCGGTGGTGGCAGCGGCAATGGCAGTGAATGA 855 0.5556 MATETATGAEESELKTYWCHECDMSVALSSSSSSSPSPSPLLCPHCHTHFLELMDSPSLNDAVSPLSSLSLFDSPFFHRLIHHHLISNSNTTDTQNDDVVFEDPLSLLSPPLIPSKTASSKSSVTAVPVILVTAALLSQLDPNGVVSCAVCKDDIEIDEEAKQLPCNHLYHSDCITPWLELHDSCPLCRFRLSAEAEEEEEDSFDGALTSSEIRSQLRAAMVRLSELMEEEEDDFYGLRTTLNHIASRHGLIGSNGTSVVSEEGEGGGLENFSRFGGGSGNGSE 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151193g00009 284 CDD RING-H2_RNF126-like 148 189 - -
Stsc151193g00009 284 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 58 190 - -
Stsc151193g00009 284 SMART ring_2 148 188 IPR001841 -
Stsc151193g00009 284 Coils Coil 214 234 - -
Stsc151193g00009 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 207 IPR013083 -
Stsc151193g00009 284 Pfam Ring finger domain 147 189 IPR001841 -
Stsc151193g00009 284 SUPERFAMILY RING/U-box 147 193 - -
Stsc151193g00009 284 ProSiteProfiles Zinc finger RING-type profile. 148 189 IPR001841 -
Stsc151193g00009 284 MobiDBLite consensus disorder prediction 253 284 - -
Stsc151193g00009 284 Pfam zinc-ribbon 16 54 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151193g00009 Stsc-Chr151193 51440 54593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151193g00009 11 238 C3H Transcription Factor Family AT3G60080 35.115 2.76e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151193g00009 K11982 - qsa:O6P43_029465 239.195