Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151191g00012 ATGACTCCTCCTTCAGATATCAATCACTATTCTCATCCATGTATATATGGGGATTATAGTTCTTCACGCTCAGAGAGAAGGCCTGGTTTCATGAGATGGCTAAGTAGGCTTTTCAAAGGAGGCTCCAATAGAGGAAGAGGCGGCCGTCGCCTCCAAGAGCCGGATGAGGAAAACATGGCTTGGCGCGCGCCGTCTAGACCAATGGATGATGGTGCTAGAGCTCATAACAGGGAGAAAGACGACCTAGGCCATGCGATGTCACGATCTTCAGCTGAAGATTTAAAGAGACCAAATGCACATCAAGGATATAATTGGGGGACAGACAATGATGATTATGGAAAAGCACTTCAAGATAGTTTGAACTCATCTGCATACCCTCCATATAATGCTGCTCCATATTACCCCAGAGATTATAGAAAAATATGTGGAGGGTGTAACCAGGAGATACTCTATGGAAATTGTTTGGGATGCATGGATACTTATTATCATCCGGATTGCTTTCGTTGTCACTCTTGTCAGTATCCCATTACCGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAGTTGACACACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGATTAATTGAGTACAGGTGCCACCCCTTTTGGTCCCAAAAGTACTGTCCATCTCATGAATATGATTATACATCTCGCTGCTGCAGTTGTGAAAGATTGGAGCCTCGGAATGTAAAATACTACAGACTTGAAGATGGACGAAGCTTATGCATGGAGTGCATGGAATCTGCTATAATCGACACCGGTGACTGCCAGCCCCTTTACCATTCCATCAGAGATTACTATGAAGGGATGAATATGAGAATAGATCAACAAATTCCAATGCTTCTTGTGGCCAGAGAAGCACTCAATGAAGCTATTGTTGGGGAGAAAAATGCTGTTCATCACATGCCAGAAACAAGGGGCATATGCCTTTCAGAAGAACAGACTATCACCAGTATTCATAGAAGACAAAGACATGGAGGCCATAGACGAATGGGGATGAGAACTCAAAATCAAATGCTGGTTAGAAGATGTGAAGTTACAGCAATTCTTGTCCTATATGGTCTTCCAAGGTTACTCACAGGTGCCATCCTTGCCCATGAGTTAATGCATGCATGGTTAAGGCTTAAAGGTGACATACATTTTCATCATTATCTTTGTATTATACTCTCAGTATACGTAATAAACATCATATTTATGTTGAACAAAGCAGGTTACCGCAACCTGAATCCTGAGGTAGAGGAAGGCATATGTCAGGTTCTCTCATACATGTGGCTTGAGTCAGAAGTAATGCCTTCAGCTTCTGCAGCATCATCATCATCTTCTTATCCTCCTTCATCCTCCTCAAAGAAAGGAGCAAAGTCTCATGTTGAAAACAAATTGGGAGAGTTTTTCTTGAATCAGATTGCAAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCTGCAAATGAAGCTGTTAATAAGTATGGTTTACGTGCCATTCTTGACCATATTCGTTACACTGGTCTTCTACCAGAGTAG 1590 0.422 MTPPSDINHYSHPCIYGDYSSSRSERRPGFMRWLSRLFKGGSNRGRGGRRLQEPDEENMAWRAPSRPMDDGARAHNREKDDLGHAMSRSSAEDLKRPNAHQGYNWGTDNDDYGKALQDSLNSSAYPPYNAAPYYPRDYRKICGGCNQEILYGNCLGCMDTYYHPDCFRCHSCQYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDYTSRCCSCERLEPRNVKYYRLEDGRSLCMECMESAIIDTGDCQPLYHSIRDYYEGMNMRIDQQIPMLLVAREALNEAIVGEKNAVHHMPETRGICLSEEQTITSIHRRQRHGGHRRMGMRTQNQMLVRRCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGDIHFHHYLCIILSVYVINIIFMLNKAGYRNLNPEVEEGICQVLSYMWLESEVMPSASAASSSSSYPPSSSSKKGAKSHVENKLGEFFLNQIANDSSPAYGGGFRAANEAVNKYGLRAILDHIRYTGLLPE 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151191g00012 529 CDD LIM_DA1 142 194 - -
Stsc151191g00012 529 SMART lim_4 141 193 IPR001781 -
Stsc151191g00012 529 Pfam Protein DA1 425 523 IPR022087 -
Stsc151191g00012 529 Pfam Protein DA1 291 400 IPR022087 -
Stsc151191g00012 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 167 - -
Stsc151191g00012 529 MobiDBLite consensus disorder prediction 46 95 - -
Stsc151191g00012 529 PANTHER PROTEIN DA1-RELATED 2 33 399 IPR045218 -
Stsc151191g00012 529 Gene3D Cysteine Rich Protein 128 199 - -
Stsc151191g00012 529 Pfam LIM domain 142 195 IPR001781 -
Stsc151191g00012 529 MobiDBLite consensus disorder prediction 41 107 - -
Stsc151191g00012 529 MobiDBLite consensus disorder prediction 1 25 - -
Stsc151191g00012 529 FunFam Protein DA1-related 2 131 195 - -
Stsc151191g00012 529 ProSitePatterns LIM zinc-binding domain signature. 142 176 IPR001781 -
Stsc151191g00012 529 ProSiteProfiles LIM domain profile. 140 200 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151191g00012 Stsc-Chr151191 68607 73013 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc151191g00012 DA1-like 9.1e-50 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151191g00012 - - gmx:100784976 837.795