Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151191g00010 ATGGAGGAAAATTTTGAGTCCTCTCATGTCCCGCAACAAAGCAGAAGGAACAAGCTCAGAGAAATGGTCCAAACCCAAAAACAACAACAACCACCACAAACATTCCCTCCTTCATTTCAAGCCAGCATAGCTCAACCCTTTGAGACAAACCCAATTTCATCAACATTTAACTCCAAACCACCCCATTATTATTCCTTTCTAGCAAAGAGTTCTTCACAGCTAGAACATTACCCTGAAAGCCTTCACAATCTTCTTCTTCCACCCCATTTGGTGGATCATAATCATCATGTGTCCCAAGAAACATGCAGTGATATGAGAAACATTATTGGTCCTGTGGTTGTTCCTTTTACTGGCTATGCTTCCATATTGAAGAGATCAAGGTTTCTGAAGCCAGCTCAGCAGATTCTTGAAGACATGTGTGGCAGTATTTTGGTTCCTCCACCAAGATTGAATGAAAGTGTTGATGATCATGAAGAAGACCCCATCATTAGGGATGGAGCTCAAAATCATTGTAGGGATTCTGTACTTGGTTGCATGCTAGATGAGGTATACAAGAAGTATATTCTATACTGCCAACAAATGCAATCAGTGGTGTCATCATTTCAGAAAGTAGCTGGGCTTGGAAATGCCACTCCATACATATCCTTTGGTATCAAATCCATTTCCAAGCATTTTGGATGTTTGAAACATGCTATCTATGACCAAATTCAGTTCACAATGAAGAAAACTACTTCTCCTGCATCTAACAGTGTTCTTGAATCAGTGCAAAGCTTACAGTCTGTTCAACCTGTTTTGAGATCCCAAAGAGGGCTTCCTGATCATGCTGTAGCTTTGTTGAGGAGATGGCTCTTTGAACACTTCTTACACCCATATCCTACTGATTCTGAAAAGGATACATTGGCTCAACAAACTGGCCTTTCAAGATGTCAGGTTTCAAATTGGTTCATCAATGCAAGAGTGAGAATCTGGAAGCCCATGGTGGAAGAGATGCACATGAATGGGGAACAGCAGGCCCAAGAATCAAAAGTGAACCACAATGCAAAGAAGCCCACTATTGTTAGCCCATTAACCAAAGTTACTAACCCATATGAAAAGCCTGCCCCAATCACCAAGAAGAACAGAATATTACTATATCCCAACTCCCAAGCAAAGGTTCAACCGTTCAAGAGTTGA 1173 0.4118 MEENFESSHVPQQSRRNKLREMVQTQKQQQPPQTFPPSFQASIAQPFETNPISSTFNSKPPHYYSFLAKSSSQLEHYPESLHNLLLPPHLVDHNHHVSQETCSDMRNIIGPVVVPFTGYASILKRSRFLKPAQQILEDMCGSILVPPPRLNESVDDHEEDPIIRDGAQNHCRDSVLGCMLDEVYKKYILYCQQMQSVVSSFQKVAGLGNATPYISFGIKSISKHFGCLKHAIYDQIQFTMKKTTSPASNSVLESVQSLQSVQPVLRSQRGLPDHAVALLRRWLFEHFLHPYPTDSEKDTLAQQTGLSRCQVSNWFINARVRIWKPMVEEMHMNGEQQAQESKVNHNAKKPTIVSPLTKVTNPYEKPAPITKKNRILLYPNSQAKVQPFKS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151191g00010 390 SMART HOX_1 265 329 IPR001356 GO:0003677
Stsc151191g00010 390 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 339 - -
Stsc151191g00010 390 CDD homeodomain 266 326 IPR001356 GO:0003677
Stsc151191g00010 390 Pfam Associated with HOX 122 232 IPR006563 -
Stsc151191g00010 390 Gene3D - 268 348 - -
Stsc151191g00010 390 ProSiteProfiles 'Homeobox' domain profile. 262 325 IPR001356 GO:0003677
Stsc151191g00010 390 SMART prehox3 117 234 IPR006563 -
Stsc151191g00010 390 SUPERFAMILY Homeodomain-like 269 333 IPR009057 -
Stsc151191g00010 390 Pfam Homeobox KN domain 282 321 IPR008422 GO:0003677|GO:0006355
Stsc151191g00010 390 MobiDBLite consensus disorder prediction 23 40 - -
Stsc151191g00010 390 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151191g00010 Stsc-Chr151191 59551 61778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151191g00010 110 332 Homeobox Transcription Factor Family AT5G02030 46.388 8.52e-64 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc151191g00010 POX 3.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151191g00010 - - adu:107457744 603.979