Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151189g00004 ATGGCTGTGTTGTTACTACAATTCAGTTTTGCCATGGAGATCTTCTGCCTCTCTTCTTCTCATGCAGATAGAATTTCTCATCTTCCTGGACAACCCCATGTAGCCTTTCAACAATTCTCAGGATATGTTACAGTGGATCACAAGAAACACAAGGCTTTGTTTTACTATTTTGTTGAATCTGAAGCTGATCCAACTTCAAAGCCTCTTGTGCTGTGGCTCAATGGAGGACCTGGTTGTTCTTCCCTTGGAGTAGGTGCATTCTCAGAAAATGGACCTTTCAGGCCAGATGGGGAAGCTCTTGTTCAAAATGAGTATAGTTGGAACAAAGTGGCAAACATGTTGTATTTGGAGACACCAGTTGGAGTGGGGTTCTCTTATGCCAAAGGTAGCTCCTCCTATACCACAGTGAATGATGAAACAACTGGGCATTATGTTCCACAACTTGCAAAGCTCATGATTGAGATCAACAAAAAGGAGAAGATATTCAATCTGAGAGGCATAGCTTTGGGTAATCCAGTTCTAGAATATGCCACTGACTTCAATTCAAGGGCTGAGTTTTTTTGGTCTCACGGATTAATATCAGATTCAACTTATGAAATGTTCACCAAAGACTGTAACTATTCTCGGTATGTCAGTGAATACTACAGAGATTCAGTTTCCCCTATTTGTTCAAAGGTTATGAGTCAAGTAAGCAAAGAAACAAGCAAATTTGTGGACAAATATGATGTCACCCTTGATGTTTGCATCTCCTCAGTGCTTTCACAGTCCAAAGTTATTTGCCCGCAAACCCAACAAGCAAATGAGACCATCGATGTGTGTGTGGATGACAAAGTTACAAATTATTTGAACAGAAGAGATGTGCAGCAGGTGCTCCATGCCAAGCTTATTGGGGTTCGCAAGTGGGATGTCTGCAGCAACGGTGATCAAGATTCAGTGATTCCACTTACCGGAAGCCGCACCTTGGTTCAAAAGCTGTCAAAACAACTCGGACTGAATACAACAGTTCCTTACAGAGTATGGTTTGAAGGCCAACAGGTTGGTGGATGGACTCAAGTTTATGGCAACATTCTCTCATTTGCAACCATCAGAGGAGCCTCCCATGAAGCCCCTTTCTCACAGCCTGAAAGATCACTTGTTTTATTTAAGTCATTCTTGGAAGGCAACCCTCTACCTGAAATTTTCTGA 1185 0.4211 MAVLLLQFSFAMEIFCLSSSHADRISHLPGQPHVAFQQFSGYVTVDHKKHKALFYYFVESEADPTSKPLVLWLNGGPGCSSLGVGAFSENGPFRPDGEALVQNEYSWNKVANMLYLETPVGVGFSYAKGSSSYTTVNDETTGHYVPQLAKLMIEINKKEKIFNLRGIALGNPVLEYATDFNSRAEFFWSHGLISDSTYEMFTKDCNYSRYVSEYYRDSVSPICSKVMSQVSKETSKFVDKYDVTLDVCISSVLSQSKVICPQTQQANETIDVCVDDKVTNYLNRRDVQQVLHAKLIGVRKWDVCSNGDQDSVIPLTGSRTLVQKLSKQLGLNTTVPYRVWFEGQQVGGWTQVYGNILSFATIRGASHEAPFSQPERSLVLFKSFLEGNPLPEIF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151189g00004 394 Gene3D - 273 305 - -
Stsc151189g00004 394 Gene3D alpha/beta hydrolase 20 140 IPR029058 -
Stsc151189g00004 394 Gene3D alpha/beta hydrolase 141 259 IPR029058 -
Stsc151189g00004 394 FunFam Carboxypeptidase 291 387 - -
Stsc151189g00004 394 ProSitePatterns Serine carboxypeptidases, histidine active site. 357 374 IPR033124 GO:0004185
Stsc151189g00004 394 PRINTS Carboxypeptidase C serine protease (S10) family signature 103 115 IPR001563 GO:0004185|GO:0006508
Stsc151189g00004 394 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 126 IPR001563 GO:0004185|GO:0006508
Stsc151189g00004 394 PRINTS Carboxypeptidase C serine protease (S10) family signature 357 370 IPR001563 GO:0004185|GO:0006508
Stsc151189g00004 394 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 24 135 IPR001563 GO:0004185|GO:0006508
Stsc151189g00004 394 FunFam Uncharacterized protein 20 112 - -
Stsc151189g00004 394 Pfam Serine carboxypeptidase 142 306 IPR001563 GO:0004185|GO:0006508
Stsc151189g00004 394 Pfam Serine carboxypeptidase 30 140 IPR001563 GO:0004185|GO:0006508
Stsc151189g00004 394 SUPERFAMILY alpha/beta-Hydrolases 21 390 IPR029058 -
Stsc151189g00004 394 Gene3D - 306 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151189g00004 Stsc-Chr151189 27877 30924 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151189g00004 306 390 Calmodulin-binding Proteins AT2G22960 28.235 2.77e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151189g00004 K16297 - gmx:100790287 678.322