Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151189g00002 ATGTCTAGCACTAACAGCACTTGTCTCATGGAAGAAAGAGAGCTCTCTGATGCAAACAACACCTATGAACTCATCCCTATTCCTCTTCCTATGCCTCCTCAACTCAGTGAAGATTGGTATATACCTGACAACACTGCTGCTACTATCCAAAATCATCAACCTCCGGGTTCAGATTCACATACAAGGGACATCAACTTCTTTCACCAACAAGATAACAACACTTTCTTCCATCCATCTTCATCTTTCCCTTCATCCATGTTCATCACCAACCTTGAACCTTCTTATCATCACCCTACTCCAAAACCCATCTTTTCTTCTCTTCTAAGTGGCATGATCATCCCTACCACCACCACCACCAATAACAACCCTTTATTATTTGATCACAATAATAATTCCCACCAGCATCAGATGATGGGGTTTCTTGAACCTCAAGCTTTCATGACCACTCCATCAAATGCAGATGCTACCCTCTTGGGGGGTTTAGGCGCCTTTCCAACAAGTTTGATCAACTCATCATCATCAGACCCCAACAATAATAACTTATCAGCAACGGTGATGAGCTGTGTAATCCCACAAGAACAACAAGATAAACCCCCCAATAAGCTAGCCCTCTTTGAAAATAATACTACTAGTAGTGGTGCGGTTGCTGCAAATTCATCATCATGGATGTTGAACAACAAGTACTCCAACATACTCATGAGACCCCTTGAATCTTTGTCTCCATCTTCAGGTGCACAGCCAACACTCTTTCAGAAGAGAGCAGCACAACACAATAAGAAAATCATCAACATCACAGAAGAAGAAGAAGAAAGAGGAAAGAGAAAGATTGATGATAATGAGGAACAACAAGAAGTAGAGAAAAGGAAGCTGGAGATGGAAGATATTGGAGATGGAAGCTTGTTGAACAGCTATGATGATTATTCTGATCATGACATGGTTGAGGATAGCATTGACAACAACAACAACACCACCAACATGATGAAGATGGAATCAGAGAGTAGTAACAAAAACAAGAATATTATTATTGGTGAAACCAGTAACAATTTGCAGAAAGGGAATAATAATAACAAGAAGAAGACAGGGATGCCTGCTAAGAACTTGATGGCTGAACGCCGCAGAAGGAAGAAACTCAATGACAGACTCTACATGCTCAGATCCGTTGTTCCTAATATCAGCAAAATGGACAGGGCTTCAATACTTGGGGATGCAATTGAATATATGAAAGAACTTCTGCAAAAGATTAATGACCTCCATAATGAATTGCAATCAATGCCTTCTCATCCTCCTGCACCTGCTTCATCAAGCTTGCATCATCCTTTGACACCAACTAATAATAATACTGCTACTCTACCGCCACCGCCACCAGCTGCTTCTCTTCCCAGCCGCATGATGATGAAGGAAACTGCTTCTTGCCCCTCTTCCTCATTCTCAACTCATCATCCCAATGACCAGCCTGCCAGGGTTGAGGTTGGTTTGCGTGAGGGAAGAGGAGTAAACATCCATATGTTTTGTGATCAGAAGCCTGGTCTGTTGCTCTCAACACTCACCACTTTGGACAACCTTGGCTTGGATATCCAGCAGGCAGTTATCAGTTTCTTCAATGGCTTTGCTATGGACATTTTTCGAGCTGAGCAATGCAATGAAGGTCAGGATCTCCACCCAGATCAAATCAAAGCAGCACTCATTGAAGCATCTGAAGCATCTGGCTTCCATAACATCATGTAG 1725 0.4226 MSSTNSTCLMEERELSDANNTYELIPIPLPMPPQLSEDWYIPDNTAATIQNHQPPGSDSHTRDINFFHQQDNNTFFHPSSSFPSSMFITNLEPSYHHPTPKPIFSSLLSGMIIPTTTTTNNNPLLFDHNNNSHQHQMMGFLEPQAFMTTPSNADATLLGGLGAFPTSLINSSSSDPNNNNLSATVMSCVIPQEQQDKPPNKLALFENNTTSSGAVAANSSSWMLNNKYSNILMRPLESLSPSSGAQPTLFQKRAAQHNKKIINITEEEEERGKRKIDDNEEQQEVEKRKLEMEDIGDGSLLNSYDDYSDHDMVEDSIDNNNNTTNMMKMESESSNKNKNIIIGETSNNLQKGNNNNKKKTGMPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYMKELLQKINDLHNELQSMPSHPPAPASSSLHHPLTPTNNNTATLPPPPPAASLPSRMMMKETASCPSSSFSTHHPNDQPARVEVGLREGRGVNIHMFCDQKPGLLLSTLTTLDNLGLDIQQAVISFFNGFAMDIFRAEQCNEGQDLHPDQIKAALIEASEASGFHNIM 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151189g00002 574 SMART finulus 367 416 IPR011598 GO:0046983
Stsc151189g00002 574 Coils Coil 262 293 - -
Stsc151189g00002 574 Gene3D - 350 426 IPR036638 GO:0046983
Stsc151189g00002 574 MobiDBLite consensus disorder prediction 420 460 - -
Stsc151189g00002 574 MobiDBLite consensus disorder prediction 266 285 - -
Stsc151189g00002 574 FunFam BHLH transcription factor 357 425 - -
Stsc151189g00002 574 CDD bHLH_AtAMS_like 364 426 - -
Stsc151189g00002 574 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 223 563 - -
Stsc151189g00002 574 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 364 432 IPR036638 GO:0046983
Stsc151189g00002 574 Pfam Helix-loop-helix DNA-binding domain 368 410 IPR011598 GO:0046983
Stsc151189g00002 574 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 361 410 IPR011598 GO:0046983
Stsc151189g00002 574 MobiDBLite consensus disorder prediction 420 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151189g00002 Stsc-Chr151189 7260 9791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151189g00002 232 544 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.118 1.39e-77 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151189g00002 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151189g00002 - - ahf:112732910 724.546