Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151189g00001 ATGAGGTATGGTGCATTTGGTGAATACCCTGTTCTTCATGGTCATAAAGTTGAGAATTCACATGGAAACTTTTCAATGCCACCACCACCCCTCACTCAATATGAGAGTCCTCGTTCTAAGGAACTGCTGCCTAAACCGAAATTGGCGAAAACCTCTGACATTTCAAGACCAAAAGATGGTGAATGCAAACTTTTTGGCATCTCACTTCTCAGTAGCCCACCTGCACCAGAGACTCCTACATCACAAAGAAATGTTGCAAGTGAGACCGTGAGTCACACGCATCCTACCCACCAGCATCGCACATTTGAAAGTGAACAGAAGTCTGAAAATTCAATGGGCTCTAAAGCAGCAGATGGTCTAGTTGTAGTTGATGAGCCGCATCTGAGAGATGTTCAACTCAAACCACACAGTGGTTCTTCTAGGAGTTGCACTAAAGTTCACAAGAAGGGGATTGCCCTTGGTAGGTCAGTGGACCTTACGAAGTTTAGTGGCTATGGTGAATTAATTGTTGAATTGGATCAGTTGTTTGAATTTGGGGGTGAACTGATCTCTGCCAAAAAGGACTGGCTTACTGTATACACCGACAATGAGGGCGACATGATGCTTGTTGGTGATGATCCATGGCAGGAATTCTGTGCAATGGTACGTAAAATTTACATCTATCCCAGAGAGGAGATTCAGAAAATGATCCCCGGTACCTTAAGTTCAAAAAACGAAGAGAACCAGTTGGCTAGTGAAGGTGCTGATGCACAAGAAATAAAATGCCAGTCGCATCATTCAGCTTCTACACCTGATCATTCTTAG 804 0.4378 MRYGAFGEYPVLHGHKVENSHGNFSMPPPPLTQYESPRSKELLPKPKLAKTSDISRPKDGECKLFGISLLSSPPAPETPTSQRNVASETVSHTHPTHQHRTFESEQKSENSMGSKAADGLVVVDEPHLRDVQLKPHSGSSRSCTKVHKKGIALGRSVDLTKFSGYGELIVELDQLFEFGGELISAKKDWLTVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPREEIQKMIPGTLSSKNEENQLASEGADAQEIKCQSHHSASTPDHS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151189g00001 267 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 44 229 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc151189g00001 267 Gene3D - 136 230 - -
Stsc151189g00001 267 MobiDBLite consensus disorder prediction 232 267 - -
Stsc151189g00001 267 SUPERFAMILY CAD & PB1 domains 141 218 - -
Stsc151189g00001 267 MobiDBLite consensus disorder prediction 73 92 - -
Stsc151189g00001 267 MobiDBLite consensus disorder prediction 69 115 - -
Stsc151189g00001 267 MobiDBLite consensus disorder prediction 20 56 - -
Stsc151189g00001 267 ProSiteProfiles PB1 domain profile. 141 223 IPR000270 GO:0005515
Stsc151189g00001 267 MobiDBLite consensus disorder prediction 40 56 - -
Stsc151189g00001 267 FunFam Auxin response factor 136 230 - -
Stsc151189g00001 267 Pfam AUX/IAA family 185 225 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151189g00001 Stsc-Chr151189 4744 5725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151189g00001 6 267 B3 DNA Binding Superfamily AT5G62000 45.455 4.78e-71 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc151189g00001 AUX_IAA 3e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151189g00001 - - gmx:100815956 393.275