Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151188g00009 ATGAGTACAAAATCTGATTCAAGCAATATGCTTGGTGAATCTGATGCAGTTGTGATCTCTGGGAAGATCATGATTGCAGTAGTGGTGTTACTCTCATTGTTCTTTGTTTTTGTCTTTATGCTTCACATCTGTTCCAAGTTTTCCATGTGGCGTGTTCAGCAAGAAACCTCCATTCCTTCGCCACATGGTCGCCGTCGCCGCCGCCACCATCGCCACTTTGTATTCGCCTCAGGCGAAGACCCTATCATCCAAGGAAACAAAAATGTTGGGCTTGACCCTTCAATCCTTAAGTCCATACCTGTGTTGGTGTTCCAACCCCATGAATCCAAAGATGATTTAGAATGTGCTGTTTGCATCTCTGAGCTTGTTGAAGGTGAAAAGTTCAGAACTTTGCCACATTGCAATCATGGATTCCATGTTGATTGCATTGACATGTGGTTCCAATCACATTCTACATGTCCCCTTTGTAGGACACTAGTTACTAATAGCACTCCAAGTGTTCGAGAGAATGTCTCAGAGAACAGTGAGTCACCATCAGAAGCTGAAAACTCTGCTCGTGTGAATAGCAATGATGAGTCTTCAAATTTTCCAACACATGTTTTGGTTTGGGGTGATCAAACTCAATTTTTTCACACTACTGAGGATCCACATTGCTCATCATCATCATCATCATCATCTGGTTCATGTTCTTCAAGCAGTGAAAGTGGAGGTGACAGTATCAGTAGCAGCAGCAATGGAAGAACCAATGGAGTTTTGGTGATTGATATACCAAATGATGAGGTCACTCCTGAAGAAGATAATGAGATGAAATCATCACCAATGGTTGCAAGATTGAGGTCAATCAAGAAGCTTCTAAGTAGGGATAAGAAGTCAACTAGTCCTTGTAGTCCCAATTCTGTTGATGTGGAACAAGCACAGAGTTAG 924 0.4221 MSTKSDSSNMLGESDAVVISGKIMIAVVVLLSLFFVFVFMLHICSKFSMWRVQQETSIPSPHGRRRRRHHRHFVFASGEDPIIQGNKNVGLDPSILKSIPVLVFQPHESKDDLECAVCISELVEGEKFRTLPHCNHGFHVDCIDMWFQSHSTCPLCRTLVTNSTPSVRENVSENSESPSEAENSARVNSNDESSNFPTHVLVWGDQTQFFHTTEDPHCSSSSSSSSGSCSSSSESGGDSISSSSNGRTNGVLVIDIPNDEVTPEEDNEMKSSPMVARLRSIKKLLSRDKKSTSPCSPNSVDVEQAQS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151188g00009 307 PANTHER RING-H2 FINGER PROTEIN ATL16 23 273 IPR044600 GO:0016567|GO:0016740
Stsc151188g00009 307 SMART ring_2 115 156 IPR001841 -
Stsc151188g00009 307 CDD RING-H2_EL5-like 114 157 - -
Stsc151188g00009 307 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Stsc151188g00009 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 162 IPR013083 -
Stsc151188g00009 307 MobiDBLite consensus disorder prediction 165 192 - -
Stsc151188g00009 307 Pfam Ring finger domain 114 157 IPR001841 -
Stsc151188g00009 307 SUPERFAMILY RING/U-box 95 164 - -
Stsc151188g00009 307 MobiDBLite consensus disorder prediction 213 251 - -
Stsc151188g00009 307 FunFam RING-H2 finger protein ATL3 83 162 - -
Stsc151188g00009 307 MobiDBLite consensus disorder prediction 213 307 - -
Stsc151188g00009 307 MobiDBLite consensus disorder prediction 290 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151188g00009 Stsc-Chr151188 63230 64243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151188g00009 19 289 C3H Transcription Factor Family AT1G53820 39.274 4.48e-51 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151188g00009 - - gmx:100775523 260.766