Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151188g00002 ATGATGGAGGACCGAAGGCTGGTGCTGGTTCTGTTCAGCACCTGCATTCTCTCTTTCATGGTCTTTGCCATTAATGCTGACACAGATCCAAATGATGCTAATGCTCTAAGGAGCATGTACCAGAGTATGAACTCACCATCTCAGCTCAATTGGCCTCAAAATGGCAATGATCCTTGTGGAGAGTCTTGGAAAGGCATTACTTGCTCCCACGGTCGCGTCACCGAGATTAAGTTACCTGGTCTTCAACTTAGTGGAACTTTGGGTTACCAGCTACAAAGCTTGTCATCTGTGACTTACCTAGACTTGAGTAACAACAATCTTGGTGGCAGCTGGTACCAGCTCCCTCCGAATTTGGAGCACTTAAATCTTGCTAATAATAATTTCAATGGGCTGGTTCCGTATTCAATCTCTCAAATTCCTTCGCTTAAATACCTGAATCTTGGTCACAACCAGTTCCAACAAGGATTGTCTGTCGACTTTTCACAGCTTACTTCCCTTTCTACACTGGATCTTTCGTCCAATTCCATGACCGGAGACCTCCCTCAAACAATGAGCTCACTTTCAAGCCTGTCAACACTTTATCTGCAAAACAACCAGTTCACCGGCACCATCGATGTTCTTGCTAACCTGCCACTCGACACTTTGAATGTGGAAAACAATCATTTTACCGGCTGGATACCGGAACAGTTAAATGGCATAAACCTGCAAAAGGGTGGTAACTCATGGAACTCAGGGCCTGCACCCCCTCCTCCTCCTGGGACACCTCCAGCAACAACCAGGCGCCACCACAAGTCCGGTGGACAAGGCAGCTCATCTGATGGTAGCTCTAGCGACGGGGGCAAAAAATCTGGTATTGGAGGCGGTGGCATTGCTGGAATAGTGATCTCTATATTGGTGGTTGGGGCAATAGTAGCATTCTTCCTGGTGAAGAAAAGATCCAAGAAGTCATCGTCATTAGACATGGAAAAGCTTGACAATCAGCCATTGGCTCCTCTTGCTTCAAATGAAGTCCACGGACTGAATTCTACGCATAGTTCGACGGTAATTGACTTGAAGACATTTGATGACACTCCTGTGGAACCAATAAATGTTAAACCCCCTATTAAACCCCCACCTCTCAAATCATTTGATGAAGAAGAAATTCCGAAGAAGCCAGCTGCTGTCAAGAAGACTGTTGCGGCTCCCGCAAATGTGAAAGCATATTCTATAGCTGACCTGCAAATTGCTACTTCAAGCTTCAGTGTGGATCAACTCCTAGGTGAGGGGTCTTTCGGACGTGTATACCGTGCACAATTTGATGATGGCAAGGTTCTTGCTGTGAAGAAGATAGATTCATCTATCCTTCCTCATGATTCGTCCAACGATTTTGTAGAAGTAGTCTCAAACATCTCCCATTTGCATCATCAAAACGTGACAGAGCTTGTTGGTTATTGTTCGGAGCATGGTCAACACCTCTTGGTCTACGAGTTCCATAAAAACGGATCGCTGCATGACTTCCTTCACCTACCTGATGAATACAGCAAACCGTTGATATGGAATTCTCGTGTCAAGATCGCTTTAGGGACAGCTCGCGCTTTAGAGTACCTGCATGAAGTTTGTTCGCCTTCGGTTGTTCATAAGGATATTAAGTCAACCAATATATTGCTTGATGCAGATCTTAACCCTCATCTTTCAGATTGTGGATTGGCAAGCTATATTCCGAATGCAAACCAGGTATTGAACAATGATGCTGGATCGGGATACGAAGCACCTGAAGTTGGCATGTCTGGTCAGTATACGCTTAAGAGTGATGTCTACAGCTTTGGAGTTGTCATGTTGGAACTTCTTAGTGGAAGGAAACCATTTGACAGTTCAAGGCCAAGATATGAGCAGTCTTTGGTACGGTGGGCGACACCGCAACTCCATGATATTGACGCGCTGGCTAAAATGGTTGATCCTGCGCTGGAAGGGCTATACCCTGTTAAGTCGCTGTCTCGTTTTGCCGATGTTATTGCACTTTGTGTTCAGCCGGAGCCGGAATTCCGACCACCAATGTCGGAAGTGGTTCAAGCATTAGTGAGGTTAGTGCAGAGAGCAAACATGAGCAAAAGGACATTTGGGACTGAGCAAGGAGGAACACCAAGAGCGGGTGATGAGCCTGATACACAAGACATGTAA 2157 0.458 MMEDRRLVLVLFSTCILSFMVFAINADTDPNDANALRSMYQSMNSPSQLNWPQNGNDPCGESWKGITCSHGRVTEIKLPGLQLSGTLGYQLQSLSSVTYLDLSNNNLGGSWYQLPPNLEHLNLANNNFNGLVPYSISQIPSLKYLNLGHNQFQQGLSVDFSQLTSLSTLDLSSNSMTGDLPQTMSSLSSLSTLYLQNNQFTGTIDVLANLPLDTLNVENNHFTGWIPEQLNGINLQKGGNSWNSGPAPPPPPGTPPATTRRHHKSGGQGSSSDGSSSDGGKKSGIGGGGIAGIVISILVVGAIVAFFLVKKRSKKSSSLDMEKLDNQPLAPLASNEVHGLNSTHSSTVIDLKTFDDTPVEPINVKPPIKPPPLKSFDEEEIPKKPAAVKKTVAAPANVKAYSIADLQIATSSFSVDQLLGEGSFGRVYRAQFDDGKVLAVKKIDSSILPHDSSNDFVEVVSNISHLHHQNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGTARALEYLHEVCSPSVVHKDIKSTNILLDADLNPHLSDCGLASYIPNANQVLNNDAGSGYEAPEVGMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRYEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTFGTEQGGTPRAGDEPDTQDM 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151188g00002 718 Gene3D Transferase(Phosphotransferase) domain 1 492 704 - -
Stsc151188g00002 718 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 689 IPR046959 -
Stsc151188g00002 718 MobiDBLite consensus disorder prediction 696 718 - -
Stsc151188g00002 718 ProSitePatterns Protein kinases ATP-binding region signature. 419 442 IPR017441 GO:0005524
Stsc151188g00002 718 PRINTS Leucine-rich repeat signature 97 110 - -
Stsc151188g00002 718 PRINTS Leucine-rich repeat signature 163 176 - -
Stsc151188g00002 718 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Stsc151188g00002 718 Gene3D Ribonuclease Inhibitor 31 135 IPR032675 -
Stsc151188g00002 718 ProSiteProfiles Protein kinase domain profile. 413 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151188g00002 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 253 - -
Stsc151188g00002 718 Pfam Leucine rich repeat 160 200 IPR001611 GO:0005515
Stsc151188g00002 718 Pfam Leucine rich repeat 108 152 IPR001611 GO:0005515
Stsc151188g00002 718 Gene3D Ribonuclease Inhibitor 136 246 IPR032675 -
Stsc151188g00002 718 MobiDBLite consensus disorder prediction 236 283 - -
Stsc151188g00002 718 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 377 490 - -
Stsc151188g00002 718 SMART serkin_6 413 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151188g00002 718 CDD STKc_IRAK 419 688 - -
Stsc151188g00002 718 MobiDBLite consensus disorder prediction 261 279 - -
Stsc151188g00002 718 Gene3D Phosphorylase Kinase; domain 1 377 490 - -
Stsc151188g00002 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 491 699 - -
Stsc151188g00002 718 SUPERFAMILY Protein kinase-like (PK-like) 395 685 IPR011009 -
Stsc151188g00002 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Stsc151188g00002 718 Pfam Protein tyrosine and serine/threonine kinase 415 685 IPR001245 GO:0004672|GO:0006468
Stsc151188g00002 718 ProSiteProfiles Leucine-rich repeat profile. 189 211 IPR001611 GO:0005515
Stsc151188g00002 718 SUPERFAMILY L domain-like 28 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151188g00002 Stsc-Chr151188 12718 18046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151188g00002 2 717 Strubbelig Receptor Gene Family AT1G53730 66.346 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Stsc151188g00002 PK_Tyr_Ser-Thr 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151188g00002 - - gmx:100780323 1010.75