Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151187g00002 ATGAGCATTGTTGAACCAAATTACAACACCTCAGAAACCGAAAGCAGTTGCGCTTCAAACTCAACTAATTCCAAGAATCACAACAAGACCACAACAACTCTAACAGAAACCGTAACCGCAACTGTAACCGTAACCGCAAAGCGCATTAGGGATTCGTCTAACAAGCACCCGGTGTACCGGGGTGTACGGATGCGGAATTGGGGGAAGTGGGTGTCTGAAATTAGAGAGCCGCGCAAGAAGTCTCGTATATGGCTTGGAACATTCTCGACCCCCGAAATGGCCGCCAGGGCTCACGACGTCGCCGCCTTGAGTATTAAAGGCTCCGCCGCCATCCTCAATTTCCCTAACCTCGTACACTCCCTCCCCCGCCCTGCCTCCCTCGCACCTCGCGACGTCCAGGCCGCTGCTGCCAAAGCCGCTAAAATGGTCAATTTCGATTCTCCGAGTCCGACTACTTCTTCATCGTCTTCTTCGTTATCATTATCATCTTCTTCTTCGTCGATGGAGTTGTGCTCCGACGAGGAGGAGCTGAGCGAGATCATTGAGCTTCCGAGGCTGGAGAGTAGTGGTGAGTTGGATAAGGAGTTTGTTTTTGCTGACTCGGTGGACGGTTTGATTTACCAGCCACTGCCGTGGTTTTCGCCGGAGATGGCTGCGGCTTCGGCGGCGGACGTGGAGGAAGTTGTTGAAGATGGGGTTGTAAGTCCTTCTGGAAGTTCTCTTTGGAATTATTATTACTACTACTAA 747 0.5141 MSIVEPNYNTSETESSCASNSTNSKNHNKTTTTLTETVTATVTVTAKRIRDSSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGSAAILNFPNLVHSLPRPASLAPRDVQAAAAKAAKMVNFDSPSPTTSSSSSSLSLSSSSSSMELCSDEEELSEIIELPRLESSGELDKEFVFADSVDGLIYQPLPWFSPEMAAASAADVEEVVEDGVVSPSGSSLWNYYYYY 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151187g00002 248 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Stsc151187g00002 248 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Stsc151187g00002 248 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Stsc151187g00002 248 MobiDBLite consensus disorder prediction 1 33 - -
Stsc151187g00002 248 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Stsc151187g00002 248 MobiDBLite consensus disorder prediction 144 165 - -
Stsc151187g00002 248 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Stsc151187g00002 248 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
Stsc151187g00002 248 CDD AP2 59 117 IPR001471 GO:0003700|GO:0006355
Stsc151187g00002 248 MobiDBLite consensus disorder prediction 145 165 - -
Stsc151187g00002 248 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 190 - -
Stsc151187g00002 248 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Stsc151187g00002 248 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151187g00002 Stsc-Chr151187 38268 39385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151187g00002 47 212 AP2-EREBP Transcription Factor Family AT5G11590 66.286 6.67e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc151187g00002 AP2 7.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151187g00002 K09286 - cit:102608812 204.912