Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151186g00004 ATGGGAACACTTCCTTCAGTACCAGGATCTCCTTTGTTGAACACACAAGCACTGAGGCGGTACAAATCGCCATGCACTTTTGTGGTTCCTAAATACTCTCTTAGATTCACTCGGATATGTTGCAAGAAGCTATCAGAAAGTGGCATTGATGAGAAGGAAAAACCCTCCACCAGCAACAATAGCACTGCTTCTAAATCCAAGGATAGAATGGAAGATTACAATATTGCTATGAAGAGAATGATGAGGAACCCTTATGAATATCACCATGATCTGGGTATGAATTACACACTTATAACTGACAATCTTATTGTGGGATCCCAACCACAGAAACCTGAAGACATAGATCATCTCAAGAAGGAAGAGGGTGTGGCATACATTTTGAACTTGCAGCAGGATAAGGATGTTGAATATTGGGGAATAGACTTGAATTCGATAACAAGGAGGTGTCACGAACTGGAAGTTCGACATATGCGGAGGCCGGCAATAGACTTTGATCCAAACTCCTTGCGGAATGTTCTACCTAAAGCAGTCTCATCATTGGAATGGGCAATCTCGGAAGGAAAAGGAAGAGTTTATGTGCATTGCACTGCTGGACTTGGGAGAGCTCCTGCAGTGGCAATAGCTTATTTGTTCTGGTTCTGTGACATGAATCTAAATACCGCATATGAGTTGTTAACTTCAAAGAGACCATGTGGACCTAATAAAAGAGCAATACGAGGAGCTACCTATGATTTGGCCAAGAATGATCCATGGAAGGAGCCATTTGAGTCTCTTCCGGATCATGCATTTGAGGATATAGCAGAGTGGGAGAGGAAATTGATTCAAGGTCGCATTCGCTCCCTTCGTGGAACTTGA 855 0.4281 MGTLPSVPGSPLLNTQALRRYKSPCTFVVPKYSLRFTRICCKKLSESGIDEKEKPSTSNNSTASKSKDRMEDYNIAMKRMMRNPYEYHHDLGMNYTLITDNLIVGSQPQKPEDIDHLKKEEGVAYILNLQQDKDVEYWGIDLNSITRRCHELEVRHMRRPAIDFDPNSLRNVLPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVAIAYLFWFCDMNLNTAYELLTSKRPCGPNKRAIRGATYDLAKNDPWKEPFESLPDHAFEDIAEWERKLIQGRIRSLRGT 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151186g00004 284 SMART dsp_5 94 244 IPR020422 GO:0006470|GO:0008138
Stsc151186g00004 284 Pfam Dual specificity phosphatase, catalytic domain 115 234 IPR000340 GO:0008138|GO:0016311
Stsc151186g00004 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 91 236 IPR029021 -
Stsc151186g00004 284 CDD DSP_laforin-like 93 240 IPR045204 GO:0019203
Stsc151186g00004 284 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 77 284 - -
Stsc151186g00004 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 94 251 IPR020422 GO:0006470|GO:0008138
Stsc151186g00004 284 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 38 254 - -
Stsc151186g00004 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 230 IPR000387 GO:0016311|GO:0016791
Stsc151186g00004 284 Gene3D Protein tyrosine phosphatase superfamily 77 284 IPR029021 -
Stsc151186g00004 284 MobiDBLite consensus disorder prediction 48 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151186g00004 Stsc-Chr151186 39055 42393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151186g00004 22 284 Protein tyrosine phosphatase (PTP) family AT3G10940 74.074 3.02e-145 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151186g00004 - - gmx:100787079 453.751