Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151184g00015 ATGACGAGTCCGGTTTTCAGCACCTTGCCTGAAAACTCAAACCAATTTTCTGGAAAAACTATTCGGAGTGCTGTTCTTGCACTGCCTGCCCCATCTCAGCGTGATTTGAAAAAGAGTTGTCAAACTGCAGAAGGTTCATGCTCCCATCAGAGTACCTCAGAACAAGACCCCTCTCATTTGTCTAATGACAAATCAGAGATCAAATGTCAACCTTTCTATCAAAATATCCGAAACATGTCTGTGGAAAAAAATAATTTTGTAACTGGCTCTCTTGTTAAGAACCCAATGCTATCTGTTCCTGCACAAGTGAACAATGCTTCTGCAAATGGACTACAGGACCCAGCTCCAGAATCTGGAGATGTGGAAAATACTAGTTTGAACTGTTCAGAAAGAAACTCTAAAGCCACAACATCTACGCAGTCGAGCTGCAAGGGTAAAAAAAGCTCAAAATTATTAAAGAAGAAGTATATGCTAAGGTCATTAGGAAGCAGCGATAGAGCTTTGCGGTCAAGGACACGCGAAAAACCTAAACCACCTGAGTCAAATAGCAATTTGGTTGATGTTAATAATGATGGAGTGAAGAATAAAAGGGGGAGGAAGAAGAAGAAAAAGAGTAGAGGGGAGGAAGTTATTGATGAATTTTCTAGAATAAGAGCTCGCTTGAAATATTTATTGAGCCGAGTTAGATATGAGCAGAACTTGATTGATGCTTATTCTCATGAAGGCTGGAAAGGATACAGTTTGGATAAGTTAAAGCCTGAAAAGGAGCTTCAACGGGCTAAGACTGAAATACTTCGACGTAAATTGAAAATTAGGGATCTCTTTCGATATTTGGACTCATTATGTGCCGAAGGAAGGCTTCCAGAATCTCTGTTTGATTCTGAAGGAGAGATTGACAGTGAGGATATATTCTGTGCTAAATGTAGTTCCAAAGAGTTGAGCACAAACAATGATATAATTCTCTGTGACGGTGCTTGTGAACGTGGATTTCACCAGCTCTGTTTGGATCCTCCTTTGTTAACTGAAAACATTCCACCTGGTGATGAGGGTTGGCTATGCCCGGCATGTGATTGCAAAGATGACTGTATGGAACTTGTTAATGACACCTTAGGAACACATCTCTCTCTTGATGACAACTGGGAGAGGGTTTTTCCGGAAGCAGCTGCAGTTGATGCATTTAATGTGGATCACAACTCAGTACTTCCTTCTGATGATTCTGATGATGATGATTACAATCCTGATGTTCAAGAAGATGTGGAGGTTGAAGGGGGTGAATCAAGTTCTGATGAATCTGAGTATGCTTCTGCTTCTGAGAAACTGGAGGATTCTGGCCCTGAGGATCAATACTTGGGCCTTCCTTCTGAAGATTCTGAGGATGATGATTATGATCCTGATGCTCCAGATCACGACATTAAAGTTGCAGAGGAAAGTTCAAGTTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTACAATTAATGATAATATGTCCCCTGTACATGGTGAAGATATCACATCGGCTTCATTGGATGGTGCAAAGAAGTTTAAAGGATCTAGCAAAACAAGTAAAGTCGGTAAGAAGCCATCTGTAGCTGATGAATTGTCATCTTTACTAGAGGCAGATCCTGGCCAAGAGAGTTACACTCCCATTTCAGGGAAAAGGAATGTGGAAAGGTTGGACTACAAAAAGCTGTATGATGAGACATACAAAAGTGAGACAAGTGATGACGAAGACTGGAACGCCACTCCTAGCCCAAGTAGGAAGAAGAATCTCACTGGTAAATTGACTCCAGTGTCACCAAATAGGAAAGCCACAAATGATTCTACACATACTCTGAGAAGTGAGGATAAAGCTGAAAATACAAATAACTCAGCTGCTAAATCACTTGAAGGCTCTGGAAAATTAGGTTCCGGGGAGAAAAAACGTAGATCTTCAACATACAACAGACTTGGAGATGCTGCAATTCAGAGACTTTACAAATCTTTCAAAGAAAATCAGTATCCAGATCGGGCCACAAAAGAAAGCTTGGCACAAGAAATTGGACTCACACTTCAGCAGGTAAGTAAATGGTTTGACAACAACAGATGGAGCTTCCGGCATTCATCCCATAAGGAACCCTGGACAGGTGAAAATGCTTCGGTGCAGACCGCTAATGGCATAGATGAAAATGAGGGGACACCTGGTGGAGAGGGGAGGGACAGTGAATTAGTGCCCCAAGAGGACACCAGAGCAAACTCAAAAACCCCGAGCTCTAGAAAAAGGAAGCATATGTCTGAACCCAAGCTCTAG 2292 0.418 MTSPVFSTLPENSNQFSGKTIRSAVLALPAPSQRDLKKSCQTAEGSCSHQSTSEQDPSHLSNDKSEIKCQPFYQNIRNMSVEKNNFVTGSLVKNPMLSVPAQVNNASANGLQDPAPESGDVENTSLNCSERNSKATTSTQSSCKGKKSSKLLKKKYMLRSLGSSDRALRSRTREKPKPPESNSNLVDVNNDGVKNKRGRKKKKKSRGEEVIDEFSRIRARLKYLLSRVRYEQNLIDAYSHEGWKGYSLDKLKPEKELQRAKTEILRRKLKIRDLFRYLDSLCAEGRLPESLFDSEGEIDSEDIFCAKCSSKELSTNNDIILCDGACERGFHQLCLDPPLLTENIPPGDEGWLCPACDCKDDCMELVNDTLGTHLSLDDNWERVFPEAAAVDAFNVDHNSVLPSDDSDDDDYNPDVQEDVEVEGGESSSDESEYASASEKLEDSGPEDQYLGLPSEDSEDDDYDPDAPDHDIKVAEESSSSDFTSDSEDLAATINDNMSPVHGEDITSASLDGAKKFKGSSKTSKVGKKPSVADELSSLLEADPGQESYTPISGKRNVERLDYKKLYDETYKSETSDDEDWNATPSPSRKKNLTGKLTPVSPNRKATNDSTHTLRSEDKAENTNNSAAKSLEGSGKLGSGEKKRRSSTYNRLGDAAIQRLYKSFKENQYPDRATKESLAQEIGLTLQQVSKWFDNNRWSFRHSSHKEPWTGENASVQTANGIDENEGTPGGEGRDSELVPQEDTRANSKTPSSRKRKHMSEPKL 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151184g00015 763 CDD homeodomain 641 703 IPR001356 GO:0003677
Stsc151184g00015 763 ProSitePatterns Zinc finger PHD-type signature. 305 356 IPR019786 -
Stsc151184g00015 763 MobiDBLite consensus disorder prediction 166 180 - -
Stsc151184g00015 763 SMART PHD_3 304 357 IPR001965 -
Stsc151184g00015 763 MobiDBLite consensus disorder prediction 35 64 - -
Stsc151184g00015 763 SUPERFAMILY FYVE/PHD zinc finger 294 363 IPR011011 -
Stsc151184g00015 763 MobiDBLite consensus disorder prediction 107 146 - -
Stsc151184g00015 763 Gene3D - 643 713 - -
Stsc151184g00015 763 MobiDBLite consensus disorder prediction 708 723 - -
Stsc151184g00015 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 353 IPR013083 -
Stsc151184g00015 763 MobiDBLite consensus disorder prediction 585 608 - -
Stsc151184g00015 763 MobiDBLite consensus disorder prediction 477 503 - -
Stsc151184g00015 763 SUPERFAMILY Homeodomain-like 639 706 IPR009057 -
Stsc151184g00015 763 MobiDBLite consensus disorder prediction 556 584 - -
Stsc151184g00015 763 MobiDBLite consensus disorder prediction 403 427 - -
Stsc151184g00015 763 MobiDBLite consensus disorder prediction 700 763 - -
Stsc151184g00015 763 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 41 752 - -
Stsc151184g00015 763 MobiDBLite consensus disorder prediction 107 149 - -
Stsc151184g00015 763 ProSiteProfiles Zinc finger PHD-type profile. 302 359 IPR019787 -
Stsc151184g00015 763 ProSiteProfiles 'Homeobox' domain profile. 642 702 IPR001356 GO:0003677
Stsc151184g00015 763 FunFam Homeobox protein HAT3.1 644 713 - -
Stsc151184g00015 763 MobiDBLite consensus disorder prediction 162 206 - -
Stsc151184g00015 763 MobiDBLite consensus disorder prediction 32 64 - -
Stsc151184g00015 763 MobiDBLite consensus disorder prediction 727 763 - -
Stsc151184g00015 763 MobiDBLite consensus disorder prediction 398 651 - -
Stsc151184g00015 763 CDD PHD_PRHA_like 304 356 IPR045876 -
Stsc151184g00015 763 Pfam Homeodomain 653 698 IPR001356 GO:0003677
Stsc151184g00015 763 SMART HOX_1 640 706 IPR001356 GO:0003677
Stsc151184g00015 763 FunFam Homeobox protein HAT3.1 285 363 - -
Stsc151184g00015 763 Pfam PHD-finger 304 359 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151184g00015 Stsc-Chr151184 76063 83244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151184g00015 161 699 Homeobox Transcription Factor Family AT3G19510 45.629 9.28e-130 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Stsc151184g00015 Homeodomain 2.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151184g00015 - - aip:107617775 1013.83