Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151183g00001 ATGCCGGAAGAAGTAATAAGGAGGAGAGTGGGGGTGGGTTTGCATCAGGCGGTAGGAGGTTACACCATTGGGGGGGAGTTGATGGATCAGATTGGGGAACAGAGAGCAGGGAATCACACGGTTTTCATGGATAATCTCCCTGAAGATGTTTCAAAGAGGTCCCTGTATAAAGTGTTTGGTAGATATGGCTTCATCTCAGATATCTATGTGTCAAGAAGATCTAGGAGGAACCCAAAGAGAACCTTTGCTTTCATCAGGTTCAAATCTTACGGGGGAGCCTTGAAGTCGATTTCAAACATGAACGGAACAATGTGGGGAGGGACAAAACTATTCGTTACTCTATCTAAGTCCAGAAGAGAGATGAAAGTCAGTAATGGGAATACTGGAAGAGGCAACCTGTTGAAATTGGGTCCGAAAATAATAAAAAATGGGTAG 435 0.4414 MPEEVIRRRVGVGLHQAVGGYTIGGELMDQIGEQRAGNHTVFMDNLPEDVSKRSLYKVFGRYGFISDIYVSRRSRRNPKRTFAFIRFKSYGGALKSISNMNGTMWGGTKLFVTLSKSRREMKVSNGNTGRGNLLKLGPKIIKNG 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151183g00001 144 CDD RRM_SF 41 112 - -
Stsc151183g00001 144 Gene3D - 28 135 IPR012677 -
Stsc151183g00001 144 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 38 126 - -
Stsc151183g00001 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Stsc151183g00001 144 SMART rrm1_1 40 113 IPR000504 GO:0003723
Stsc151183g00001 144 SUPERFAMILY RNA-binding domain, RBD 34 131 IPR035979 GO:0003676
Stsc151183g00001 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151183g00001 Stsc-Chr151183 6212 6646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151183g00001 41 123 Eukaryotic Initiation Factors Gene Family AT1G22760 34.118 4.56e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151183g00001 - K12885 adu:107484100 76.6405