Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151181g00003 ATGCCTAACCTTGTTCGCGACAATCTCTTCATCGGCAACATCACCGACGCGGCGGAAATCCTCCAGAACGGTGGAGCTGGCGGTGCTGCCGGAGGACCAGACTTCACACACATCCTCTCCGTCCTCAGCTCCGCCTCCATTTCCTTCTTCTCCGAATGGCGCCCTTCCCTCTCCATCCCCGTAAAGGAGATCAACAAGGTCTACGTCTCCGGCAGCGGTGACTCCGGCAAGTGTGCCCTGCCGCCGGAGAAGCTCCTTTACTCGCTGGAGTACGCCGGACGTGACCTCAAGCTGGTGAGGATGGCGGTGCCTCTGAAGGACACGGAGAACGAGGACTTGCTTGATTACCTCGAAGTTTGTATCGATTTCATTGATCGTAGCAGGAAGGAAGGTTCCGTTTTAGTCCACTGCTTCGCCGGTGTTTCTAGAAGTGCGGCGGTGATTACAGCGTATTTGATGAGAATGGAAAATCTCTCCCTTGAAGATGCCCTTGAATCATTAAGGAAGAGCTATGAATTTGTTTGCCCCAATGATGGCTTTCTTGAGCAGTTGAGAATGTTCGAGGAGATGGGCTTCAAGGTTGATCACTCCAGTTCTATATATAAGCGCTTTCGTCTGAAAATACTTGGTGATAATCATTTCTCAGGGTCTAGAATAGACAGTTCTAAACTGGGTGCAGACCCTGGCATGCCTGTACAAATTTCTTCAGATGTTGAAGGAGCTACTAAAGTAGAAAATAATAGGAGTCCTACATATCGCTGTAAGAAGTGCCGGCGAATTGTCGCATTGCAAGAAAATGTTTTAGCTCATGTTCCTGGCGAGGGTGAGACGTCCTTTGAGTGGCATAAGCGGAGAAGTGGCAATCCTTTCAACAAGTCTAATGAATCCTTTGAGGAAGGCGCGTTGGAGGGAAAGCTGTCATGTGTTCATTGCGATGCCCGTTTGGGATACTTCAATTGGGCAGGCATACAGTGCAGCTGCGGAAGCTGGATAACCCCAGGTTTTCAACTCCACAAAGGCCGCGTAGATATAAGCCCTTTGTTGATGGAGAGGATTAAAGTCTTGTTTCCACGGACCTGGCTGTATTCTGCTCAGTTATTGCAGGCTCAACCAATGCAATTGTTAGAGGGAGGATTCTAG 1140 0.4939 MPNLVRDNLFIGNITDAAEILQNGGAGGAAGGPDFTHILSVLSSASISFFSEWRPSLSIPVKEINKVYVSGSGDSGKCALPPEKLLYSLEYAGRDLKLVRMAVPLKDTENEDLLDYLEVCIDFIDRSRKEGSVLVHCFAGVSRSAAVITAYLMRMENLSLEDALESLRKSYEFVCPNDGFLEQLRMFEEMGFKVDHSSSIYKRFRLKILGDNHFSGSRIDSSKLGADPGMPVQISSDVEGATKVENNRSPTYRCKKCRRIVALQENVLAHVPGEGETSFEWHKRRSGNPFNKSNESFEEGALEGKLSCVHCDARLGYFNWAGIQCSCGSWITPGFQLHKGRVDISPLLMERIKVLFPRTWLYSAQLLQAQPMQLLEGGF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151181g00003 379 Pfam Dual specificity phosphatase, catalytic domain 100 189 IPR000340 GO:0008138|GO:0016311
Stsc151181g00003 379 Gene3D Protein tyrosine phosphatase superfamily 4 210 IPR029021 -
Stsc151181g00003 379 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 193 IPR020422 GO:0006470|GO:0008138
Stsc151181g00003 379 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 96 193 IPR029021 -
Stsc151181g00003 379 FunFam Dual specificity protein phosphatase 12-like 4 210 - -
Stsc151181g00003 379 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 114 169 IPR000387 GO:0016311|GO:0016791
Stsc151181g00003 379 CDD DSP_DUSP12 2 195 - -
Stsc151181g00003 379 ProSitePatterns Tyrosine specific protein phosphatases active site. 135 145 IPR016130 GO:0016311|GO:0016791
Stsc151181g00003 379 SMART dsp_5 1 190 IPR020422 GO:0006470|GO:0008138
Stsc151181g00003 379 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151181g00003 Stsc-Chr151181 15953 18142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151181g00003 98 189 Protein tyrosine phosphatase (PTP) family AT3G06110 37.634 7.81e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151181g00003 K14819 - gmx:100804683 533.102