Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151181g00001 ATGGGACTCTGCCATGGAAAACCCATTGAAACCTCACAAAGAGGAGTAGGAGGAGGAAGAGGAGAAGACCCTTCATCATTCCTTGATGAAAAAGGTGCGGTTCTTTCACTGCCACCACCAACACCAAGTTCCCGAACCACAAAACCCTCATCAAAGTTCCCATTTTTCAGCCCAAGCCCTTTGCCAAGCTTCTTCAAGAACTCACCTGCACCAAGTTCAAACTCTTCAAGTGTAAGCTCAACACCATTGAGGATCTTCAAGAGGCCATTCCCTCCTCCTTCTCCTGCAAAGCACATAAGGGCTTTGCTTGCAAGGAGGCATGGCTCTGTTAAGCCCAATGAGGCATCAATTCCTGAAGGGAGTGAGTGTGAGGTTGGATTGGACAAGAGTTTTGGATTCTCTAAGCAGTTTTTGGTTCACTATGAGCTTGGGGAAGAAGTGGGGCGTGGCCATTTTGGCTACACTTGCTCTGCCAAGGGTAAAAAAGGAACCTTCAAGGGACATGAGGTTGCTGTCAAAGTCATTCCAAAAGCAAAGATGACAACTGCAATTGCTATTGAGGATGTGAGGAGAGAAGTAAAGATATTGCGAGCTTTAACCGGGCATAAAAACCTGGTACAATTCTATGAAGCCTATGAAGATGATGACAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGCGAACTGCTAGATAAGATTCTTTCCAGAGGTGGAAAGTACTCAGAAGAGGATGCCAGGGTTGTCATGATTCAGATATTAAGTGTTGTAGCCTATTGTCACCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCGGAGAATTTTCTTTTTGCTTCTAAGGAAGAAAGTTCCACACTTAAGGCGATTGATTTTGGACTCTCTGATTATGTGAAGCCAGATGAGAGGTTGAATGATATTGTTGGAAATCCAAGTTTTGATGAAGCTCCTTGGCCTTCTTTATCGGCTGATGCCATAGATTTTGTAAAGAGGCTGTTGAACAAGGATTATCGCAAAAGACTAACTGCATCTCAGGCTCTCAGTCATCCATGGCTGGCCAATCATTGTGATGATTTGAAAATACCTATTGACATGATAATCCCCAAGCAAGTTAAAGCATACATATGCTCATCATCTCTACGAAAATCAGCATTAGGGGCTCTTGCAAAGACATTAACATTAGTGCAGCTAGCTTATCTCAGAGAACAGTTTACTCAGTTAGGACCAAACAAAAATGGATCAATTTCTATGCAGAATTTCAAGACGGCCGTTTTAAGGTGTGCCACTGATGCTGCAAAGGATTCTCGAGTGTTAGATTACTTGAGCATGGTTAGTTCAATCCAATATCGGAAACTAGATTTCGAGGAATTTTGTGCTGCTGCTATAAGTGTGTATCAACTAGAGGGATTGGAGACCTGGGAGCACCATGCAAGGCGTGCCTATGAGCTGTTCGAAAAGGATGGAAATAGGCCAATCATGATCGAAGAGCTAGCTTCGGAACTTGGGCTTAGTCCATCAGTACCTGTCCATGTTGTACTCCAAGATTGGATAAGACACTCGGACGGGAAGCTTAGTTTCCTGGGGTTTGTCAGGCTTCTGCATGGAGCTTCTTCTCGCGCCTTTCACAAGGCTTGA 1632 0.44 MGLCHGKPIETSQRGVGGGRGEDPSSFLDEKGAVLSLPPPTPSSRTTKPSSKFPFFSPSPLPSFFKNSPAPSSNSSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEVGLDKSFGFSKQFLVHYELGEEVGRGHFGYTCSAKGKKGTFKGHEVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDDNVYIVMELCKGGELLDKILSRGGKYSEEDARVVMIQILSVVAYCHLQGVVHRDLKPENFLFASKEESSTLKAIDFGLSDYVKPDERLNDIVGNPSFDEAPWPSLSADAIDFVKRLLNKDYRKRLTASQALSHPWLANHCDDLKIPIDMIIPKQVKAYICSSSLRKSALGALAKTLTLVQLAYLREQFTQLGPNKNGSISMQNFKTAVLRCATDAAKDSRVLDYLSMVSSIQYRKLDFEEFCAAAISVYQLEGLETWEHHARRAYELFEKDGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGASSRAFHKA 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151181g00001 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 308 519 - -
Stsc151181g00001 543 Gene3D Transferase(Phosphotransferase) domain 1 133 311 - -
Stsc151181g00001 543 FunFam CDPK-related kinase 3 133 305 - -
Stsc151181g00001 543 Gene3D - 377 531 - -
Stsc151181g00001 543 Pfam Protein kinase domain 141 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151181g00001 543 SUPERFAMILY EF-hand 381 533 IPR011992 -
Stsc151181g00001 543 SMART serkin_6 141 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151181g00001 543 ProSitePatterns Protein kinases ATP-binding region signature. 147 173 IPR017441 GO:0005524
Stsc151181g00001 543 ProSiteProfiles Protein kinase domain profile. 141 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151181g00001 543 Gene3D Transferase(Phosphotransferase) domain 1 312 370 - -
Stsc151181g00001 543 MobiDBLite consensus disorder prediction 1 54 - -
Stsc151181g00001 543 FunFam CDPK-related kinase 1 134 229 - -
Stsc151181g00001 543 Gene3D - 371 461 - -
Stsc151181g00001 543 SUPERFAMILY Protein kinase-like (PK-like) 138 384 IPR011009 -
Stsc151181g00001 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Stsc151181g00001 543 FunFam CDPK-related kinase 1 389 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151181g00001 Stsc-Chr151181 4691 8976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151181g00001 41 538 EF-hand Containing Proteins AT3G50530 62.393 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc151181g00001 Pkinase 2.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151181g00001 K13412 - gmx:100796678 842.417