Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151180g00004 ATGCCTTCCTCTTCTTCCACTTCCAGACAACCAATTCCCCAGTCTCGCAAGCAAAAGTCCCTCGGTCTCTTATGCACCAATTTCCTGAGCTTGTATAATAGACACGACGTCCAAGTCATCGGCCTTGACGACGCCGCTGCCCGATTAGGTGTTGAGAGAAGACGGATCTACGATATAGTCAATATTCTCGAGAGCATCGGGGTGCTTGCAAGAAAGGCGAAAAATCAATATACATGGAAAGGCTTTGGCGCAATTCCCGGTGCTTTACATGAACTCAAGGAAGAGGGATTAAGGGAGAATGCATATGCTTTTGAGGGCGGCAATGACCTAAAAGTGTCTGATGATGAGGATGATGAAGAAACGTTTTCCAATCCTGGGACCGGGAGTCAAAATGACAAGTGCAATTCCAATTCAAATTCAAATTCAAATTCTGCAACACTTGCCAAATCTCTCAAAAACGATAATCGAAGGGAAAAATCATTGGCGCTGCTTACTCAGAATTTTGTAAAGCTATTTGTTTGCTCTAATATAGAAATGATCTCCCTTGATGAGGCTGCGAATTTGTTGCTTGGAGATGGCCACAGTTCATCATTAATGAGAACAAAAGTAAGACGCCTATATGATATTGCAAATGTGTTGTCCTCCATGAACCTTATCGAGAAGACTCACACCACAGATACAAGAAAACCAGCATTCAGGTGGCTGGGTTTGAGAGGGAAGGCACCAAATCAGTCCATTCACAAAAGTTCAAATACAAATGAATCTAGGAAAAGAGCGTTTGGAAGTGATGTCACAAACATTAGTTTTGAGAGGAACATAGTGGAATTAGGGGACTTTGCCTCTAAGAAGCTCAAAAAACTGGACAATGATAATGGCATAGGTCAAGCAAATGGTTTTCAACAAGGTTCAAAGGGTTTTCAGTTTGGTCCTTTTGCACCTTATGTACCCAAAGTTGGAACACCAGAGAATAATAGTGTGAAGAAGGTTCATGATTGGGACAGTCTAGCACTTAAACATCGTCCACAATACCAAAACCAAGCTTTGAGAGAACTATTCTCCCATTACATGGAAGCATGGAAATCGTGGTATTCAGAAGTTGCTGGCAAGAATCCAATGCAGATTTAG 1125 0.4196 MPSSSSTSRQPIPQSRKQKSLGLLCTNFLSLYNRHDVQVIGLDDAAARLGVERRRIYDIVNILESIGVLARKAKNQYTWKGFGAIPGALHELKEEGLRENAYAFEGGNDLKVSDDEDDEETFSNPGTGSQNDKCNSNSNSNSNSATLAKSLKNDNRREKSLALLTQNFVKLFVCSNIEMISLDEAANLLLGDGHSSSLMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGLRGKAPNQSIHKSSNTNESRKRAFGSDVTNISFERNIVELGDFASKKLKKLDNDNGIGQANGFQQGSKGFQFGPFAPYVPKVGTPENNSVKKVHDWDSLALKHRPQYQNQALRELFSHYMEAWKSWYSEVAGKNPMQI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151180g00004 374 Pfam E2F/DP family winged-helix DNA-binding domain 158 236 IPR003316 GO:0005667|GO:0006355
Stsc151180g00004 374 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Stsc151180g00004 374 PANTHER TRANSCRIPTION FACTOR E2F 11 344 IPR015633 GO:0000978|GO:0006357
Stsc151180g00004 374 MobiDBLite consensus disorder prediction 123 146 - -
Stsc151180g00004 374 FunFam E2F transcription factor 8 12 83 - -
Stsc151180g00004 374 MobiDBLite consensus disorder prediction 108 146 - -
Stsc151180g00004 374 Gene3D - 151 238 IPR036388 -
Stsc151180g00004 374 Gene3D - 11 84 IPR036388 -
Stsc151180g00004 374 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Stsc151180g00004 374 SMART E2F_TDP_2 156 236 IPR003316 GO:0005667|GO:0006355
Stsc151180g00004 374 SUPERFAMILY "Winged helix" DNA-binding domain 158 237 IPR036390 -
Stsc151180g00004 374 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
Stsc151180g00004 374 FunFam E2F transcription factor-like E2FE 151 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151180g00004 Stsc-Chr151180 25571 28378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151180g00004 15 372 E2F-DP Transcription Factor Family AT3G48160 55.108 1.96e-128 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc151180g00004 E2F_TDP 1.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151180g00004 K09391 - gmx:100806151 505.753