Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151180g00003 ATGGCAACAATCCCAATCCCAACTCGGCAGCTTTTCATCGACGGAGAATGGAAAGCCTCCATCCTCAGTAACAGAATTCCAATCATCAACCCTTCTACTCAACAAGTCATCGGTGACATTCCAGCTGCCACCAAGGAGGATGTCGACGCCGCCGTCGCCGCCGCTAAGAGAGCAGTCAACCGTAACAAAGGCAACGACTGGTCAACTGCTTCCGGCGCTCACCGTGCACGCTATCTCCGCGCCATCGCTGCCAAAGTCATCGAGAGAAAGGATCAACTCGCTAAGCTTGAAGCCCTTGATTGCGGAAAGCCACTTGATGAAGCTGCCTGGGATATCGATGATGTTGCTGGTTGCTTCGAATTCTATGCTGACCTTGCAGAGAAACTCGACTCCAAGCAGAAGGAACCCGTCTCTCTTCCCATGGAAACTTTCAAGAGCTATGTCCTCAGAGAACCTATTGGTGTTGTTGGATTAATCACTCCATGGAACTATCCTCTGTTAATGGCTACATGGAAGGTTGCCCCAGCTTTGGCAGCTGGTTGTGCTGCGATATTGAAGCCTTCTGAATTGGCATCTGTGACATGTTTGGAGCTGGCTGACATATGCAAAGAAGTGGGCCTTCCTTCGGGTGTATTAAATATTCTCACTGGATTAGGCCCCGATGCTGGTGCTCCTTTAGCTTCCCACCCTGACGTAGACAAGATTGCCTTTACTGGAAGCTCTGCAACTGGAAGCAAGGTTATGACAGCTGCTGCACAATTAGTCAAGCCCGTCTCACTAGAGCTTGGTGGAAAAAGCCCAATCATTGTTTTTGAGGATGTTGATCTTGATAAGGCTGCTGAATGGACCCTCTTTGGTTGCTTCTGGACAAATGGTCAGATATGCAGTGCAACTTCCCGCCTTATTGTTCATGAAAGTATAGCAACAAAATTTTTGGATACCCTTGTAAAATGGGCCAAAAACATCAAAATTTCAGATCCCTTTGAAGAAGGTTGCAGACTAGGCCCTGTTGTTAGTGAAGGACAGTATGAAAAAATATTGAAGTTTATCTCAAATGCTAAGAGTGAGGGTGCAACCATTTTGACTGGTGGATCTCGTCCTGAGCATCTAAAGAAGGGATTTTTCATTGAACCAACCATTATCACGGATGTGACTACCTCGATGCAAATTTGGAAAGAAGAAGTATTTGGACCCGTGCTCTGCGTAAAAACATTTAGTACCGAGGAGGAGGCTCTTGATCTAGCACATGACACCATCTATGGGTTAGGAGCTGCTGTGATATCAAATGACCTTGAAAGATGTGATCGTGTATCTAAGGCATTTAAGGCTGGAATTGTATGGATCAATTGCTCTCAACCATGTTTCTCTCAAGCACCATGGGGAGGCACGAAACGTAGTGGTTTTGGTCGCGAATTAGGAGAATGGGGACTTGACAACTACTTGAGCGTGAAGCAAGTTACTCAGTATATCTCTAATGAACCATGGGGCTGGTACCAGTCTCCTTCAAAGCTGTGA 1515 0.4647 MATIPIPTRQLFIDGEWKASILSNRIPIINPSTQQVIGDIPAATKEDVDAAVAAAKRAVNRNKGNDWSTASGAHRARYLRAIAAKVIERKDQLAKLEALDCGKPLDEAAWDIDDVAGCFEFYADLAEKLDSKQKEPVSLPMETFKSYVLREPIGVVGLITPWNYPLLMATWKVAPALAAGCAAILKPSELASVTCLELADICKEVGLPSGVLNILTGLGPDAGAPLASHPDVDKIAFTGSSATGSKVMTAAAQLVKPVSLELGGKSPIIVFEDVDLDKAAEWTLFGCFWTNGQICSATSRLIVHESIATKFLDTLVKWAKNIKISDPFEEGCRLGPVVSEGQYEKILKFISNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTSMQIWKEEVFGPVLCVKTFSTEEEALDLAHDTIYGLGAAVISNDLERCDRVSKAFKAGIVWINCSQPCFSQAPWGGTKRSGFGRELGEWGLDNYLSVKQVTQYISNEPWGWYQSPSKL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151180g00003 504 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 260 267 IPR029510 GO:0016491
Stsc151180g00003 504 SUPERFAMILY ALDH-like 5 492 IPR016161 GO:0016491
Stsc151180g00003 504 Pfam Aldehyde dehydrogenase family 24 486 IPR015590 GO:0016491
Stsc151180g00003 504 FunFam Betaine aldehyde dehydrogenase 264 455 - -
Stsc151180g00003 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 268 459 IPR016163 GO:0016620
Stsc151180g00003 504 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 13 278 - -
Stsc151180g00003 504 CDD ALDH_F10_BADH 28 488 - -
Stsc151180g00003 504 PANTHER ALDEHYDE DEHYDROGENASE 5 503 - -
Stsc151180g00003 504 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 288 299 IPR016160 GO:0016491
Stsc151180g00003 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 484 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151180g00003 Stsc-Chr151180 21503 25270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151180g00003 4 502 Aldehyde Dehydrogenase Gene Family AT1G74920 82.766 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151180g00003 K00130 - gmx:100170731 907.516