Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151179g00003 ATGGAGACCTGGTCGGGACNNNNNNNNNNAGAGATCTGCCAAACATGTAGTAAGTTGAAAAATGTCTGTCAAGTGTGTCTTCTGGATCTAGAATATGGGTTGCCAGTTCAAGTCCGTGACACAGCTCTCAGTATCGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTCGCTGAAGAGCACGACCGCAAGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGCACGCCCAAATGACACTATCTTAAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTACATAAGGGGCGAATGTACTAGAGGAGCTGAATGCCCTTATAGGCATGAGATGCCAGTAACTGGGGAGCTATCTCAACAAAATATTAAAGATCGTTATTATGGTGTCAACGATCCTGTGGCTTTGAAGCTACTTGGTAAGGCTGGAGAAATGACTTCTTTGGAGGCTCCCGAGGATGAGAGCATCAAAACACTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGACTTGCGGGATCACTTCTATGCGCATGGTGAAATTGAATCTATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTTACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCTGAAGAACTATCCAACAAGCTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCACAGACAGCAAAACCGGAGTCAGATGGCTCTGATCAAGCAAGGCAGCAAGCAGCAGTGGCTCACAGTGGGTTGTTGCCTCGGGCAGTTATATCGCAACAGCAGAATCAGGATCAAGGGCAAGGAATGCCTTACTATAACAATCCACCTCCTCCTCAGCAAGAAAGAAGCTATTACCCATCAATGGATCCGCAAAGAATGGGTGCACTTATTCCATCTCAAGAGGGTCCTCCTGGTGGACCTAGTGGATCAGGTGAGAACAAACCCAATATGGAGAAGCCACAAATGCAACACTATGCCCATCCAATGATGCCTCCTCCTCCTCCTCCTGGCCAATATCATCATCCTCCTCCTCATCAGTATTATCCTCCTCCATATGGTTATATGTCACCGGTTCCCTCGTATCAGCAATACCCACCACCATATAGTGTTCAAATGGCGCCATCTCAGCCACCAGCTGCAAATCATCCATATCACCATCGTCCCATGCAGCCCGGTTCTTCACAAGCAGGGTCTGGACAGGTTGGCTCTGGATCTGCGCCAACTGAAGCCGGAGCATCAGCATCAGGGTCACAGCAGCAGTGA 1314 0.4703 METWSGXXXXEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTAKPESDGSDQARQQAAVAHSGLLPRAVISQQQNQDQGQGMPYYNNPPPPQQERSYYPSMDPQRMGALIPSQEGPPGGPSGSGENKPNMEKPQMQHYAHPMMPPPPPPGQYHHPPPHQYYPPPYGYMSPVPSYQQYPPPYSVQMAPSQPPAANHPYHHRPMQPGSSQAGSGQVGSGSAPTEAGASASGSQQQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151179g00003 437 MobiDBLite consensus disorder prediction 243 437 - -
Stsc151179g00003 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 244 IPR000504 GO:0003723
Stsc151179g00003 437 MobiDBLite consensus disorder prediction 408 437 - -
Stsc151179g00003 437 CDD RRM_RBM22 170 243 - -
Stsc151179g00003 437 SMART rrm1_1 172 240 IPR000504 GO:0003723
Stsc151179g00003 437 Pfam Torus domain 80 137 IPR032297 -
Stsc151179g00003 437 SUPERFAMILY CCCH zinc finger 102 125 IPR036855 GO:0046872
Stsc151179g00003 437 Gene3D - 92 153 - -
Stsc151179g00003 437 MobiDBLite consensus disorder prediction 343 381 - -
Stsc151179g00003 437 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 10 319 IPR039171 GO:0003723
Stsc151179g00003 437 SMART c3hfinal6 100 126 IPR000571 GO:0046872
Stsc151179g00003 437 FunFam Zinc finger CCCH domain-containing protein 4 92 151 - -
Stsc151179g00003 437 Gene3D - 155 252 IPR012677 -
Stsc151179g00003 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 231 IPR000504 GO:0003723
Stsc151179g00003 437 FunFam Zinc finger CCCH domain-containing protein 40 156 252 - -
Stsc151179g00003 437 MobiDBLite consensus disorder prediction 271 287 - -
Stsc151179g00003 437 ProSiteProfiles Zinc finger C3H1-type profile. 100 127 IPR000571 GO:0046872
Stsc151179g00003 437 SUPERFAMILY RNA-binding domain, RBD 164 252 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151179g00003 Stsc-Chr151179 13556 17631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151179g00003 163 232 Eukaryotic Initiation Factors Gene Family AT1G49760 34.667 5.31e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151179g00003 K12872 - gmx:100779917 665.611