Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151178g00011 ATGGGCAATTGCGGCACCAGAGAAGAATCTGCAGTAGTTTCCAATGCTCAAGTTCAGCAGCTCCAGGCGTCGTCCTTGAGCTCCAGGAATGGCGGCGCCGGCGCCGGAGACAGGAAGCACAGCCGCTCCGTGTCGGATCTGAGCGAGTCGTGCTCCACGCCGCGCCACTACAACATCGACGACGTCAGGAACAACACGCTGCTCTACACGCACGTGATCGCCTTCACGCTCTACGAGCTTGAGACGATCACCAAGAGTTTTCGCTCCGATTATATTCTCGGAGAGGGAGGTTTCGGAACTGTGTATAAGGGCTACATTGATGAGAATGTGAGGGTTGGTCTTAAGTCGCTGCCGGTAGCGGTTAAGGTTTTGAACAAGGAAGGGCTTCAGGGACATCGAGAATGGCTTACAGAAGTGAATTTTCTGGGGCAGCTTAGGCATCCTAATCTGGTGAAGTTGATAGGGTACTGCTGCGAGGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGGAGTCTGGAAAATCACCTATTCCGAAAGGCAACTGTCCCTTTACCATGGGCTACAAGAATGATGATTGCTCTAGGAGCTGCCAAGGGGCTTGCCTTTCTGCATAATGCTGAAAGGCCAGTAATCTACCGTGACTTTAAAACATCTAATATATTATTGGACTCTGACTATACGGCTAAGCTTTCTGATTTTGGTCTAGCAAAAGCAGGACCACAAGGTGATGAAACCCATGTATCCACCCGGGTCATGGGTACATATGGTTATGCTGCCCCTGAATATGTAATGACTGGCCACTTGACAGCTAGGAGTGATGTGTATAGTTTTGGGGTTGTTCTTTTGGAGCTTTTGACGGGAAGGAAATCTGTTGACAAGACCAGACCTGGGAAGGAACAGAGCTTAGTAGATTGGGCACGGCCAAAGCTTAATGACAAGCGCAAACTCCTGCAAATAATTGATCCTAGATTGGAAAACCAGTATTCAGTGAGGGCAGCACAGAAAGCATGTAGCTTGGCATACTATTGTTTGAGTCAAAATCCAAAAGCCAGACCACTAATGAGCGACGTGGTCGAGACATTGGAGCCATTACAAAGTTCAAATGTTGGTGTTGGTGAAGTTTCATTAACTGGCTCAAATAGTATAAGCACGGGGCACTTTCCCATGACCAAAATCTCCGACTACCGAATGCGTCCCAAGTTCTCAAACAATGTTGGTCCTGGCGCTGCTTGCCGGTCTTCTAACCCTACCTGCTCGCCGGGTGCTCCAGCAGCATGCCGGGTAAGATAA 1299 0.4919 MGNCGTREESAVVSNAQVQQLQASSLSSRNGGAGAGDRKHSRSVSDLSESCSTPRHYNIDDVRNNTLLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLPWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSNVGVGEVSLTGSNSISTGHFPMTKISDYRMRPKFSNNVGPGAACRSSNPTCSPGAPAACRVR 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151178g00011 432 Gene3D Transferase(Phosphotransferase) domain 1 170 377 - -
Stsc151178g00011 432 Gene3D Phosphorylase Kinase; domain 1 49 169 - -
Stsc151178g00011 432 PANTHER OS01G0588500 PROTEIN-RELATED 45 368 - -
Stsc151178g00011 432 FunFam Probable serine/threonine-protein kinase PBL8 170 382 - -
Stsc151178g00011 432 Pfam Protein tyrosine and serine/threonine kinase 92 364 IPR001245 GO:0004672|GO:0006468
Stsc151178g00011 432 SUPERFAMILY Protein kinase-like (PK-like) 64 365 IPR011009 -
Stsc151178g00011 432 CDD STKc_IRAK 93 367 - -
Stsc151178g00011 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Stsc151178g00011 432 ProSitePatterns Protein kinases ATP-binding region signature. 93 122 IPR017441 GO:0005524
Stsc151178g00011 432 MobiDBLite consensus disorder prediction 23 52 - -
Stsc151178g00011 432 FunFam Serine/threonine-protein kinase BIK1 55 169 - -
Stsc151178g00011 432 ProSiteProfiles Protein kinase domain profile. 87 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151178g00011 Stsc-Chr151178 58351 62235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151178g00011 61 364 Glycoside Hydrolase AT3G07070 53.746 6.02e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc151178g00011 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151178g00011 - - gmx:102662348 739.184