Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151174g00013 ATGGACGTTACGAAACACAGCTCCGTCTTCACCCACATCGCTTCAAGGGAGCTCAATTCCTTCCGAGTTCGCAAACGGCCTTACATGGATGGATTCGTCACTGGATTCGTGGAACACGGAGCTGTTGGCGTTCACCACAGCGAAGAAGGCACCATTCCCATGTCCCTCTCCTTCTGTAAGACATCTAAGTTTTCGCACATTCTGGCTTTATCTGATGAGGATGGATACCTAACCTTGTTTGATTCGCGTAAAAAATTCTCCGTGTTATCATCGTTCGAAGAAAATGCAGAGAAAGCGAAGATATGTGAGTGGGTTTCGCATCTTAATGCTGTGTTTGATATCTGTTGGATTAAGGAAGACACACAGATACTCACAGCTTCTGGTGATCAAACAATGAAGGTATGGGATGTGCAAGAAAAGAAATGTATTGGAGTGTTGAAGGGGCACACAGGGAGTGTGAAGTCTATGTGCTCTCATCCAAATAATGCTGATATTATTGTCTCTGGTTCAAGAGATGGATCCTTTTGTCTCTGGGACTTAAGATGCAAATCGGCAACTAGGGGTAAACATGGAGAAGTTAGCATATGTTCAACGGCTGTTGTCAAAGGAGCACATCTTTCATCTCAAGCAAAACGAGTCAGAAAGGGCAAGGCTAAGTCCATGAGCATTACATCCGTTCTTTGTCTCAAGGACCAGGTTTCCATAGCCACTGCCGGGGCAGTGGATAGTGTGTTGAAGTTTTGGGATACCCGAAATTTGAAGAGCTTCGTTACACAGGCATCTCCTCGTCCTCAGTCAACAGAAAAGGGAAGATTACATGGCATATCTAGCTTATCCCAAGATGAGAGCGGTCTTTTCCTTTCAGCATCCTGCATGGATAACTGCATTTATCTCTATAACATCCTTCAACTTGACAAGGGGCCTTTCAGATCTTTTCCTGGATGTCCCATAGAATCATTTTTTGTCAAGGCTGCGATTAGCCCAGATGCGTCTCAAATAGTCAGCGGTTCTAGTAATGGAAATGCCTATGTCTGGCAGGTTAACAAGCCTCAAGCGATGCCTGTTATTTTGAAAAGCCATGATGGGGAGGTTACAGCAGTTGACTGGAACCGCTCTGAGATTGGTAAATTAGCAACTGCTTCAGATGATTGCACAGTTCGGACTTGGAATCAAACCAATTATGTCTCTGACAAAAAGACTTCATGTTCCATCCGAAGAAGAGTAATGGCAATGCCTTGTACAGAAAGCAAAATGCTACTGAACAATGAAGAAAAGTATCTCAACTCAATAGACAATGAATCGTTAGATCCCCCAATTAAGTTAGCCACTCCCATCACACCACCTAAAGTTCTTGCAACTGAAGGCCACAAAAATCAGCTTCCCTCAGTATTCAATCCAACTGCATTATCTGAAAAGACTCCAGAGTCTGCTTTGAAGAGCCCCTCGTCTGTTTTGAACCCTCCATCTTCCTTGAAAAGAACTATCCTCGACTACTTTTTGGCATCATCATGA 1512 0.4378 MDVTKHSSVFTHIASRELNSFRVRKRPYMDGFVTGFVEHGAVGVHHSEEGTIPMSLSFCKTSKFSHILALSDEDGYLTLFDSRKKFSVLSSFEENAEKAKICEWVSHLNAVFDICWIKEDTQILTASGDQTMKVWDVQEKKCIGVLKGHTGSVKSMCSHPNNADIIVSGSRDGSFCLWDLRCKSATRGKHGEVSICSTAVVKGAHLSSQAKRVRKGKAKSMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKSFVTQASPRPQSTEKGRLHGISSLSQDESGLFLSASCMDNCIYLYNILQLDKGPFRSFPGCPIESFFVKAAISPDASQIVSGSSNGNAYVWQVNKPQAMPVILKSHDGEVTAVDWNRSEIGKLATASDDCTVRTWNQTNYVSDKKTSCSIRRRVMAMPCTESKMLLNNEEKYLNSIDNESLDPPIKLATPITPPKVLATEGHKNQLPSVFNPTALSEKTPESALKSPSSVLNPPSSLKRTILDYFLASS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151174g00013 503 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Stsc151174g00013 503 SMART WD40_4 261 300 IPR001680 GO:0005515
Stsc151174g00013 503 SMART WD40_4 139 179 IPR001680 GO:0005515
Stsc151174g00013 503 SMART WD40_4 305 346 IPR001680 GO:0005515
Stsc151174g00013 503 SMART WD40_4 350 390 IPR001680 GO:0005515
Stsc151174g00013 503 SMART WD40_4 97 136 IPR001680 GO:0005515
Stsc151174g00013 503 SMART WD40_4 209 249 IPR001680 GO:0005515
Stsc151174g00013 503 Pfam WD domain, G-beta repeat 105 136 IPR001680 GO:0005515
Stsc151174g00013 503 Pfam WD domain, G-beta repeat 356 390 IPR001680 GO:0005515
Stsc151174g00013 503 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Stsc151174g00013 503 MobiDBLite consensus disorder prediction 461 486 - -
Stsc151174g00013 503 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 5 501 - -
Stsc151174g00013 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 390 IPR001680 GO:0005515
Stsc151174g00013 503 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Stsc151174g00013 503 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Stsc151174g00013 503 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Stsc151174g00013 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Stsc151174g00013 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Stsc151174g00013 503 Gene3D - 41 185 IPR015943 GO:0005515
Stsc151174g00013 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Stsc151174g00013 503 Gene3D - 186 433 IPR015943 GO:0005515
Stsc151174g00013 503 SUPERFAMILY WD40 repeat-like 58 394 IPR036322 GO:0005515
Stsc151174g00013 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 181 IPR001680 GO:0005515
Stsc151174g00013 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151174g00013 Stsc-Chr151174 79060 83250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151174g00013 107 345 U-box Gene Family AT1G04510 24.904 1.06e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151174g00013 K11790 - gmx:100775857 717.613