Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151174g00010 ATGGACAAAGGTCCCAACTTTGTTCCTGGCAAGTTATTTGTAGGCCTTATACCACCAACCATAAGAAATGAACAATTAAGAGAGCACTTTGCTAAATATGGCAAGATTACGGAGTCTGTCATCATCATGAATGATGACGTCACCAGCCAGCGTCGCGGGTACGGGTTTGTAAATTTCGCAGATCCCTCAGCAGTTGATAAAGCTATTGAGGACAATAATCATTTTATCAATGGTCATAAGGTTTTGGTTGAGAAATGCATAGCAAAGGATGCTATGTTAGCATATTATGAACACTATGGTTTTGTTTCAGATGAATTGGCAACGTTCTTTGGTGAATATGGTCAAGTCATTTCTTGTAGAATAGAAAGGGATGAACACTATGGATCTATTGACTTCGAGTCTGATAAAACCGTTGATGATATTCTAGCAGCTAATGGGAATTGGATCAATTTTGGTGGAAGATTTATGCTGGAAATAAGCAAGCATATCATCCAAGGACACTTAAACAATGCTAACGCTCATGATGGATATGGTGGTGCAATTGGATATGATATTGATGCTGAATCTGGCCGTTACAGCAGCCAAAGTGTCGTCGGCCGAGCCGGGGTATTCACTGAAGGGGCTAGTGGTAGTGGAGGTCCCTCCAATGCTAGCCAAGATGATAATCCAGATTCTCTGTTTTCATATGCAATGGTCACAAAAAAGGACTTGAATAGACATAGATGA 726 0.4063 MDKGPNFVPGKLFVGLIPPTIRNEQLREHFAKYGKITESVIIMNDDVTSQRRGYGFVNFADPSAVDKAIEDNNHFINGHKVLVEKCIAKDAMLAYYEHYGFVSDELATFFGEYGQVISCRIERDEHYGSIDFESDKTVDDILAANGNWINFGGRFMLEISKHIIQGHLNNANAHDGYGGAIGYDIDAESGRYSSQSVVGRAGVFTEGASGSGGPSNASQDDNPDSLFSYAMVTKKDLNRHR 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151174g00010 241 SMART rrm1_1 85 158 IPR000504 GO:0003723
Stsc151174g00010 241 SMART rrm1_1 11 84 IPR000504 GO:0003723
Stsc151174g00010 241 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 7 167 - -
Stsc151174g00010 241 SUPERFAMILY RNA-binding domain, RBD 11 95 IPR035979 GO:0003676
Stsc151174g00010 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Stsc151174g00010 241 Gene3D - 10 88 IPR012677 -
Stsc151174g00010 241 MobiDBLite consensus disorder prediction 209 225 - -
Stsc151174g00010 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 162 IPR000504 GO:0003723
Stsc151174g00010 241 SUPERFAMILY RNA-binding domain, RBD 103 161 IPR035979 GO:0003676
Stsc151174g00010 241 Gene3D - 97 157 IPR012677 -
Stsc151174g00010 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 149 IPR000504 GO:0003723
Stsc151174g00010 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Stsc151174g00010 241 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151174g00010 Stsc-Chr151174 44106 45378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151174g00010 10 176 Eukaryotic Initiation Factors Gene Family AT2G23350 27.041 1.95e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151174g00010 K12741 K12894 ahf:112801934 127.872