Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151174g00009 ATGGAGAAAGGTCCCAACTTTGTTCCTGGGTTATTTGTAGGTTTTATACCACCAACCATGACCAATGGTCAATTACAGGACCACTTTGCTAAATATGGCAAGATTACGGATTCTGTCATCTTGAATGATCAGCGTCCCAAATACGGCTTTGTAAATTTCACAGATCCCTCTTCAGTTGATAAAGCCATTCAGGACACTGATCATTTTATCAATGGTCGTAAGGTTACGGTTCGCAAAGGCATATTAACGGTAAGGCCGAGTGATCGTGAGCACATTAAGACAAACAGACTTTATGTTTATCAAATTACTCAACATGTGTCTTCAGATGAATTGGCAACGTTCTTTGGTGAATATGGACAAGTCATTTCTTGTTGTATAGAAAGGGATCAACATTATGGATGGATTTACTTCCAGTTTAGTAAAACCGTTGATGATGTTCTAGCAGCTCATGGGAATTGGATCAATTTTCGTGGAAGATTTATGCTGGAAATAAGTAAGCATATCATCGAAAGACACTTAAAAAATGCTAATAGATCTGGAGAAGGTGGCGATTTTGGTGCGTATGATCCTCATCAAACGGCTGTTTATAACCCGGCCGGAGGAAACATGGCGAGTGGCCTGCATGATGCTAATGGTATGGTGGTTAATAACCAGTTGTGGCAGCCTTATGCTAATAATGCTATGGTACCCTTTCTAGAATTTCCTAATTCCACTAGATATAGAAGATATTACTATCCTCCTCCTCCCATCATGTATAATCCTCAATATGTTATACCTTTCCATTATGGATATGGTGGTGTCTTCACTCAAGGGGCTAGTGGTAGTGGAGGTCCCTCCAATGCTAGCCAAGATGATGATCCAGATTCTCTGTTTTCACAAAAAAAGGATTGA 891 0.3996 MEKGPNFVPGLFVGFIPPTMTNGQLQDHFAKYGKITDSVILNDQRPKYGFVNFTDPSSVDKAIQDTDHFINGRKVTVRKGILTVRPSDREHIKTNRLYVYQITQHVSSDELATFFGEYGQVISCCIERDQHYGWIYFQFSKTVDDVLAAHGNWINFRGRFMLEISKHIIERHLKNANRSGEGGDFGAYDPHQTAVYNPAGGNMASGLHDANGMVVNNQLWQPYANNAMVPFLEFPNSTRYRRYYYPPPPIMYNPQYVIPFHYGYGGVFTQGASGSGGPSNASQDDDPDSLFSQKKD 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151174g00009 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 89 IPR000504 GO:0003723
Stsc151174g00009 296 MobiDBLite consensus disorder prediction 272 287 - -
Stsc151174g00009 296 Gene3D - 10 79 IPR012677 -
Stsc151174g00009 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 161 IPR000504 GO:0003723
Stsc151174g00009 296 SMART rrm1_1 10 78 IPR000504 GO:0003723
Stsc151174g00009 296 SMART rrm1_1 96 165 IPR000504 GO:0003723
Stsc151174g00009 296 SUPERFAMILY RNA-binding domain, RBD 11 79 IPR035979 GO:0003676
Stsc151174g00009 296 SUPERFAMILY RNA-binding domain, RBD 90 160 IPR035979 GO:0003676
Stsc151174g00009 296 Gene3D - 82 166 IPR012677 -
Stsc151174g00009 296 CDD RRM_SF 97 161 - -
Stsc151174g00009 296 MobiDBLite consensus disorder prediction 272 296 - -
Stsc151174g00009 296 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 11 275 - -
Stsc151174g00009 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 74 IPR000504 GO:0003723
Stsc151174g00009 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 148 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151174g00009 Stsc-Chr151174 40642 42122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151174g00009 11 149 Eukaryotic Initiation Factors Gene Family AT1G71770 25.503 1.10e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151174g00009 - - ahf:112801934 171.4