Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151174g00008 ATGGACAAAGGTCCCAACTTTGTTCCTGGCAAGTTATATGTAGGTTTTGTACCACCAACCATGAACATTGGTCAGTTCTTACAGGACCACTTTGCTAAATATGGCAAGATTACGGATACCGTCATCATTAACGATGACATCACCGGCACGCGTTACGGGTACGGGTTTATAAAATTTGCAGATCCCTCAGCAGTTGATAAAGCTATTAAGGACAATGATCGTCTTATCAATGACCATCTGATTAGGGTTGAGAGGTCCAGATTAAAGGTGCGGTCGATAGATCAAGAGGACTATAAGACAAACAGACTTTTTGTTTATCTAATTCCTAAGCATGTGTCTTTAGATGCATTATCAACTTTCTTTGGTGAATATGGAAAAGTCATTACTTGTAGAAGAGAAAGGGGTAAACACTATGGATTTGTTTACTTCCAGTCTGCAAAAACCGTTGATGATATTCTAGCAGCTCATGGCCATTGGATCAATTTTCGTGGAAAATTTATGCTGGAAATAAGCAAGCATAAACTCCAAAGACACTTAGACAATGCTGATAGATCCAGAGAAGGTGGCGATTCTGTTGCGCAGATTCCTCCTCGAACGGCTGCTTATAGCCCGGCCGGACAAAATACATCGAGTGGCCTACGACATGGGAACCGTAAGGTGGTTAAAAATCAGTTGTGGCAGCCTTATGGCAGCTATGGAAATGTATATGGTAGTGGTGGTGAAGGTGCTATGGTGCCCTCTATAGCACTTCCTAAGTCTATTGGATATGGATGTTACTATCCTCCTCCCACCATGTATAATCCTCAATATGGAACACTTTCCCATTATGGATATGGTGGTGCAATGGGTGGTTATTATGCTGGCCATTACGACCGCCATAATGTCGTCGGCTCAGCCGGTATCCCTCAAGAGGGTAGTGGTAGTGGAGGTTCCTTGAATGCTACTAGCCAAGTTGATAATTCAACTTCTCTATTTTCATATCCAATGGTGACACAAGGGGCTAGTGGGAGTGGAGGTTCCTCTAATGCAAACCAAGATGATAATCCAGATTCTCTGTTTTCATATCAAATTGTCAGAAAAAAAGGACTTTAA 1092 0.4212 MDKGPNFVPGKLYVGFVPPTMNIGQFLQDHFAKYGKITDTVIINDDITGTRYGYGFIKFADPSAVDKAIKDNDRLINDHLIRVERSRLKVRSIDQEDYKTNRLFVYLIPKHVSLDALSTFFGEYGKVITCRRERGKHYGFVYFQSAKTVDDILAAHGHWINFRGKFMLEISKHKLQRHLDNADRSREGGDSVAQIPPRTAAYSPAGQNTSSGLRHGNRKVVKNQLWQPYGSYGNVYGSGGEGAMVPSIALPKSIGYGCYYPPPTMYNPQYGTLSHYGYGGAMGGYYAGHYDRHNVVGSAGIPQEGSGSGGSLNATSQVDNSTSLFSYPMVTQGASGSGGSSNANQDDNPDSLFSYQIVRKKGL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151174g00008 363 SMART rrm1_1 11 84 IPR000504 GO:0003723
Stsc151174g00008 363 SMART rrm1_1 102 171 IPR000504 GO:0003723
Stsc151174g00008 363 CDD RRM_SF 103 163 - -
Stsc151174g00008 363 SUPERFAMILY RNA-binding domain, RBD 9 91 IPR035979 GO:0003676
Stsc151174g00008 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Stsc151174g00008 363 Gene3D - 3 90 IPR012677 -
Stsc151174g00008 363 MobiDBLite consensus disorder prediction 201 217 - -
Stsc151174g00008 363 SUPERFAMILY RNA-binding domain, RBD 91 161 IPR035979 GO:0003676
Stsc151174g00008 363 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 7 311 - -
Stsc151174g00008 363 MobiDBLite consensus disorder prediction 333 352 - -
Stsc151174g00008 363 MobiDBLite consensus disorder prediction 179 217 - -
Stsc151174g00008 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 182 IPR000504 GO:0003723
Stsc151174g00008 363 Gene3D - 91 172 IPR012677 -
Stsc151174g00008 363 CDD RRM_SF 12 84 - -
Stsc151174g00008 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 159 IPR000504 GO:0003723
Stsc151174g00008 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151174g00008 Stsc-Chr151174 37426 39227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151174g00008 8 181 Eukaryotic Initiation Factors Gene Family AT2G36660 28.877 5.12e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151174g00008 K14411 K12741 ahf:112801934 173.326