Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151174g00007 ATGAACGATGACGTCACCGGCCAGCGATACGGGTACGGCTTTGTGAATTTCGCAGATCCCTCTGCAGTTTATAAAGCTATTGAGGACAATGATCATCTTATCAATGGCCATCTGGTTGCGGTTCGCAAATCCGAATTAAAGGTGAGGTGGCTAGATCAAGAGCACTTTCAGACAAACAGACTTTATGTTTATCTAATTCCTAAGAATGTGTCTTTAGATGCATTGGCAACGTTCTTTGGTGAATATGGAAAAGTCATTTCTTGTAGAATAGAAAGGGACAAACACTATGGATGTGTTTACTTCCAGTCTGAGAAAACCGTTGATGATATTCTAGCAGCTCATGGGAATTGGATCAATTTTCGTGGAAGAGTTATGCTGGAAATAAGCAAGCATAAAATCAAAAGACACTTAATCAATGCTAGTAGATCCGGACAAGGTGGCGATTCTGGTGCGCGTGAATCGAGTGGCCTGCGAGATGGCAACCGTAGGGTCGTTCAAAACCAGTTGTGGCAGCCTCATGGCAGCCATAGAAATGTATATGGTAGCGGTGGCGAAGGTGCTATGGTGCCCTCTATAGCACTTCCTAATTCCACTAGATATGGATCTTACTATGCTTCTCCCACCATGTATGGTCCTCAATATGGAATACCTTCCCATTATGGATATGATATTGCTGCTCATGCTGGCCGTTACGGCGGCCAAAATGTCGTCGGCCGAGCCGGTGTATCCACTCAAGGGGCTAGTGGTAGTGGAGGTTCCTCTAATGCAAGGCAAGATGATAATTCAAACTCTCTGTTTTCATATCAAATGGTCACACAAGGGGCTAGTCGGAGTGGAGGTCCCTCCAATGCAAGCAAAGATGATAATCCAGAATCTCTTGGAAAATTTTCTATTATAAAATAA 903 0.4385 MNDDVTGQRYGYGFVNFADPSAVYKAIEDNDHLINGHLVAVRKSELKVRWLDQEHFQTNRLYVYLIPKNVSLDALATFFGEYGKVISCRIERDKHYGCVYFQSEKTVDDILAAHGNWINFRGRVMLEISKHKIKRHLINASRSGQGGDSGARESSGLRDGNRRVVQNQLWQPHGSHRNVYGSGGEGAMVPSIALPNSTRYGSYYASPTMYGPQYGIPSHYGYDIAAHAGRYGGQNVVGRAGVSTQGASGSGGSSNARQDDNSNSLFSYQMVTQGASRSGGPSNASKDDNPESLGKFSIIK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151174g00007 300 MobiDBLite consensus disorder prediction 242 300 - -
Stsc151174g00007 300 MobiDBLite consensus disorder prediction 242 290 - -
Stsc151174g00007 300 SUPERFAMILY RNA-binding domain, RBD 49 135 IPR035979 GO:0003676
Stsc151174g00007 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 123 IPR000504 GO:0003723
Stsc151174g00007 300 CDD RRM_SF 61 125 - -
Stsc151174g00007 300 SUPERFAMILY RNA-binding domain, RBD 2 47 IPR035979 GO:0003676
Stsc151174g00007 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 53 IPR000504 GO:0003723
Stsc151174g00007 300 Gene3D - 1 44 IPR012677 -
Stsc151174g00007 300 Gene3D - 45 136 IPR012677 -
Stsc151174g00007 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 125 IPR000504 GO:0003723
Stsc151174g00007 300 SMART rrm1_1 60 127 IPR000504 GO:0003723
Stsc151174g00007 300 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 282 - -
Stsc151174g00007 300 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151174g00007 Stsc-Chr151174 34929 36104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151174g00007 4 222 Eukaryotic Initiation Factors Gene Family AT4G34110 24.280 1.13e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151174g00007 - - ahf:112801934 151.754