LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151173g00006	ATGTCTCTCATAACCACCGATTCCCCCCTCGCTCGTCGCATAGTTCGTTCTTTCTTGCACTTCCTCAACTCCGTTGAACCGGGGGCGGGGGTTGATGCTGAAGGGATTGAGGTTGCTAGGGAGTGTTTGGCAGAGGCTTTTAAGCTAAACTCTTCAGGTGTAGATGGTGATCAGGAATCTGATTCCTTGATTGACATGTTCAAGAGCCTTGAAGCAAGAAAGCAGTGTGAAACTATCAAGTCAGACCCAAGTCCTATGGATGCTTCTAGTTCATTCTCTGACCGTAATCCATCATCCCTTGCTCAAAATCATACGGAGGCATCGGATTCTCGGGATGAAGATCGGACACAGGGCACCGACAATTTTGCAGCATCCAAAGATGAACTCTGTGGACAATTTTTTGCTTCTCTGGAGAAAAGTCACTATTTTAGGGCAAATCTCGATGGAACTGATGACCCAATGCAACTAGAGAAAGCATCTTGTTTTTTTGATGATGCTTTTAAGGAGATGGAAAAATCTGGGTCCCCAGTATTAAATCTGAAGAATTTGGCTGAATCACTAAAATCATTAGGTAACAAGGCAATGCAATCCAAGAAATACCATGATGCAATTGAGTTGTATAACTGTGCAATTGTAGTACATGAAAAAAGTGCTGTTTATTACTGCAACAGGGCAGCTGCTTACACTGAGATTAAAAAATATGCTGAAGCAATCCAAGATTGTTATAGATCTATTGAGATTGATCCAAACTACAGCAAGGCTTACAGTCGTTTGGGTTTAGTATACTATGCACAAGGAAATTACAGAGATGCTATTGATAAAGGGTTCAGAAAAGCCTTGCAATTGGATCCAAATAACCAAACTGTTAAAGAAAATATACGGGTGGCTGAGCATAAATTGATAGAAGAGCAACACAATGCAAATCATAATCAGAGTTTTAGATCATCTTGGGAATTCCCGAACCAATCCACAAGAGGATCAAGAAGCCATGGAGTGCCACCTTTTCCGTCAATGCCATTTAACCCGAATGATATAGCAAGCATGTTCAGGGGCATGACTGCAAATGTGACAGCTTCACACCATGGGTCGCAATCTCGGGAAGGGCCAGCTGATGCCAATGCCACGGGAGCTAACGAACCCGAAATAAGGATGGGTGGGAATATTAATTTGAACTTTGATGAAATGCCTGAGGATGTAACAGGGGCCTTTAGATCTATGATGGAGATGTTCTCTGGGAGTGCATCACAGCCACAGGGGCAACAACAAGATCATATGAATGGAAGAGCAGCTCCAAACTAA	1299	0.4273	MSLITTDSPLARRIVRSFLHFLNSVEPGAGVDAEGIEVARECLAEAFKLNSSGVDGDQESDSLIDMFKSLEARKQCETIKSDPSPMDASSSFSDRNPSSLAQNHTEASDSRDEDRTQGTDNFAASKDELCGQFFASLEKSHYFRANLDGTDDPMQLEKASCFFDDAFKEMEKSGSPVLNLKNLAESLKSLGNKAMQSKKYHDAIELYNCAIVVHEKSAVYYCNRAAAYTEIKKYAEAIQDCYRSIEIDPNYSKAYSRLGLVYYAQGNYRDAIDKGFRKALQLDPNNQTVKENIRVAEHKLIEEQHNANHNQSFRSSWEFPNQSTRGSRSHGVPPFPSMPFNPNDIASMFRGMTANVTASHHGSQSREGPADANATGANEPEIRMGGNINLNFDEMPEDVTGAFRSMMEMFSGSASQPQGQQQDHMNGRAAPN	432

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151173g00006	432	PANTHER	LD24721P	6	422	IPR047150	-
	Stsc151173g00006	432	MobiDBLite	consensus disorder prediction	411	432	-	-
	Stsc151173g00006	432	MobiDBLite	consensus disorder prediction	306	336	-	-
	Stsc151173g00006	432	ProSiteProfiles	TPR repeat profile.	218	251	IPR019734	GO:0005515
	Stsc151173g00006	432	Pfam	Tetratricopeptide repeat	253	286	IPR013105	-
	Stsc151173g00006	432	SUPERFAMILY	TPR-like	183	297	IPR011990	GO:0005515
	Stsc151173g00006	432	MobiDBLite	consensus disorder prediction	78	119	-	-
	Stsc151173g00006	432	Gene3D	Immunoglobulin FC, subunit C	6	73	-	-
	Stsc151173g00006	432	MobiDBLite	consensus disorder prediction	356	387	-	-
	Stsc151173g00006	432	MobiDBLite	consensus disorder prediction	82	105	-	-
	Stsc151173g00006	432	SMART	tpr_5	218	251	IPR019734	GO:0005515
	Stsc151173g00006	432	SMART	tpr_5	252	286	IPR019734	GO:0005515
	Stsc151173g00006	432	SMART	tpr_5	184	217	IPR019734	GO:0005515
	Stsc151173g00006	432	ProSiteProfiles	TPR repeat profile.	252	286	IPR019734	GO:0005515
	Stsc151173g00006	432	MobiDBLite	consensus disorder prediction	306	330	-	-
	Stsc151173g00006	432	Pfam	Tetratricopeptide repeat	218	251	IPR001440	GO:0005515
	Stsc151173g00006	432	Gene3D	Tetratricopeptide repeat domain	179	338	IPR011990	GO:0005515
	Stsc151173g00006	432	MobiDBLite	consensus disorder prediction	356	371	-	-
	Stsc151173g00006	432	FunFam	Tetratricopeptide repeat (TPR)-like superfamily protein	179	326	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151173g00006	Stsc-Chr151173	35690	44501	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151173g00006	183	291	U-box Gene Family	AT3G07370	28.319	1.66e-07	50.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151173g00006	K16365		-	gmx:100775346	591.267