Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151172g00009 ATGGCAAAGTACTATGATATTGATGATATTATCGCAGAGGAAGAGATTGTGTCAGTTATATTTCAGAAGCCAGCATCTGGAGTGGGGATAGATCCCAGTTCTGAAACAGACTTTATTGAAACAGGTTCAAAAGTTGAACTGCCTTTTTGGCTTGCTCAGGAACTGCAGTGGAGACAAGCAGTATCAGTCAATGTTCCTCCTTGTTTCAATCAAAAAACAAGGTTAGAGATCCAGGCTGATTCTGCTAGTGTGGATTTGAGGTCCAGATGTCCATTCTTCTATGAATTTGGTTGCAAGATAGCACCCATAGTTAGTGATAGAACCATTGGGTTTCTATTGTTGTCGGCATTCAAGAGTAGGTACAAGGAAGTTCTCACCAAGGCACATACTGCAGCATTTGCAGCTGGTTCCAAATTCTGGACTATCTTGACAAAAGAAGAGATCAATTTGTATGAGGCAGCTCAATCTGCAATGATATCCTTCAAGAAGTGGCGAAAGGGGGGACCCAGATTCCAGATAGCTTCTATTCTGGGAAGAAAGAGAAAATCAACTGAATAG 558 0.414 MAKYYDIDDIIAEEEIVSVIFQKPASGVGIDPSSETDFIETGSKVELPFWLAQELQWRQAVSVNVPPCFNQKTRLEIQADSASVDLRSRCPFFYEFGCKIAPIVSDRTIGFLLLSAFKSRYKEVLTKAHTAAFAAGSKFWTILTKEEINLYEAAQSAMISFKKWRKGGPRFQIASILGRKRKSTE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151172g00009 185 PANTHER UNCHARACTERIZED 1 184 IPR010492 -
Stsc151172g00009 185 Gene3D - 1 167 IPR038437 -
Stsc151172g00009 185 SUPERFAMILY GINS helical bundle-like 65 166 IPR036224 -
Stsc151172g00009 185 Pfam GINS complex protein 45 148 IPR021151 -
Stsc151172g00009 185 CDD GINS_B_Psf3 4 66 - -
Stsc151172g00009 185 SUPERFAMILY PriA/YqbF domain 2 66 - -
Stsc151172g00009 185 CDD GINS_A_psf3 61 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151172g00009 Stsc-Chr151172 43017 45155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151172g00009 1 184 Core DNA Replication Machinery Family AT3G55490 70.109 2.22e-98 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151172g00009 K10734 - gmx:100799874 304.679