Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151172g00007 ATGGCATCCAGAGCCACTGGAACACTGATTTGTTCTTGCATGATATGGCTCTTCCTTCTCTGCGCAACCATCGCCTTCCTTCAGCTTAAGTTGGTAGATCACTCACCCCATCGAGCTTCCTCTAATGGAAAAATAACCACCACTCATCACTCCACAACTGATGACCCAGATGGAGAAAATTTGGAGGGTGTGACACACAAGGTGTATTTTGATGTTCAGATTGGTGGAAAATTAGCAGGTCGCATAGTGATGGGCCTTTTTGGGAATACAGTTCCGAAAACTGTAGAAAACTTCAGAGCGCTTTGCACTGGGGAGAAGGGGGTTGGAAAAAGTGGGAAGCCTCTTTGCTATAAAGGGAGCTTATTCCATCGGATTATACCAAGCTTTATGGTCCAGGGTGGTGATTTCACACGAGGTGATGGACGAGGCGGAGAATCGATCTATGGTGATAAATTTGCTGATGAAAACTTCAAAGTGAAGCATGATGGGCCAGGATACTTGTCAATGGCGAATTCCGGTCAAGACACCAACGGCTCCCAGTTTTTCATCACAACAGTAAGAACCAGCTGGTTGGATGGACGCCATGTTGTGTTTGGCAAGGTACTTTCAGGAATGGACATTTTGTACAAGATTGAAGCTGAAGGAAGTGAAAGTGGCACCCCAAAGAGNNNNNNNNNNATCATGACAGTCATTTATATAAAGCTGAGATTGAGATTAGTTCTACCAACAGTAAAAAGGTCAAGACTTGCCTCTACCATGGTTTACTAA 768 0.4401 MASRATGTLICSCMIWLFLLCATIAFLQLKLVDHSPHRASSNGKITTTHHSTTDDPDGENLEGVTHKVYFDVQIGGKLAGRIVMGLFGNTVPKTVENFRALCTGEKGVGKSGKPLCYKGSLFHRIIPSFMVQGGDFTRGDGRGGESIYGDKFADENFKVKHDGPGYLSMANSGQDTNGSQFFITTVRTSWLDGRHVVFGKVLSGMDILYKIEAEGSESGTPKXXXXIMTVIYIKLRLRLVLPTVKRSRLASTMVY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151172g00007 255 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 70 227 IPR002130 GO:0000413|GO:0003755
Stsc151172g00007 255 FunFam Peptidyl-prolyl cis-trans isomerase 62 233 - -
Stsc151172g00007 255 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 193 208 IPR002130 GO:0000413|GO:0003755
Stsc151172g00007 255 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Stsc151172g00007 255 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 165 180 IPR002130 GO:0000413|GO:0003755
Stsc151172g00007 255 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 86 101 IPR002130 GO:0000413|GO:0003755
Stsc151172g00007 255 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 180 192 IPR002130 GO:0000413|GO:0003755
Stsc151172g00007 255 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 69 232 IPR002130 GO:0000413|GO:0003755
Stsc151172g00007 255 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 117 134 IPR020892 GO:0003755|GO:0006457
Stsc151172g00007 255 SUPERFAMILY Cyclophilin-like 64 233 IPR029000 -
Stsc151172g00007 255 CDD cyclophilin_ABH_like 66 228 - -
Stsc151172g00007 255 Gene3D - 52 234 IPR029000 -
Stsc151172g00007 255 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 67 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151172g00007 Stsc-Chr151172 30262 33218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151172g00007 80 212 U-box Gene Family AT5G67530 45.522 2.55e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151172g00007 K01802 - gmx:100798499 358.992