Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151171g00001 ATGGCGGGGAAAGAAGAGAATCGAATATTCGTCGGAGGATTGTCATGGGACGTAACGGAGCGCCAGCTCGAGCATGCCTTTGGCCGTTACGGCAAAATTCTCGAATGCCAGATTATGATGGAAAGAGATACAGGCCGTCCACGTGGATTTGGATTCATTACATTTGCAGACCGCAGGGGAATGGATGATGCAATTAAGGAAATGCACGGACGAGAAATTGGTGACCGCACCATCTCAGTCAACAAGGCCCAGCCCAAGATGGGGGGTGACGACATAGACCAAGGTTATAGAGGTGGCTACTCATCAGGAGGGAGAGGAAGCTATGGAGTTGGGGACAGGGTTGGACAAGATGATTGCTTCAAATGTGGGCGTCCAGGGCACTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGGCCGTGGCAGGGGTGGTAGTTCATTTCCTTCACGACCTAGGTTTGGAGGTGCTGGTGGTGATCGCTTTAGTGGTGAACGTGATCGATACCTCGATGATCGCTATGATGGAGGGCGTTATGGGGATAGGGATAGGGATCGCTTTGATTCCCGAGATTACAAATATGGAAGTCGTGATCGTTATACTAGTGACAGGTATCCAACTAGTGGAGATCGATTTGCGAGTGATCGATATGGAGGCAGCTCAGATTACGCCCAAAATGGTTATGGCAAAGAAAGAGGTTATGACCGGTATGGTGGTCCACGAGGTGGTGGTGACAGGTATGGAAGTGGAATAGCAGCTCGTGACGAAGGAAGGAATTATAGGGGCAGGCCTGGTCCGTATGATCGACCGAGCAGGGGTGCTCGTCCATCGTCATTTGACCGCTACTGA 843 0.5148 MAGKEENRIFVGGLSWDVTERQLEHAFGRYGKILECQIMMERDTGRPRGFGFITFADRRGMDDAIKEMHGREIGDRTISVNKAQPKMGGDDIDQGYRGGYSSGGRGSYGVGDRVGQDDCFKCGRPGHWARDCPLAGGGRGRGGSSFPSRPRFGGAGGDRFSGERDRYLDDRYDGGRYGDRDRDRFDSRDYKYGSRDRYTSDRYPTSGDRFASDRYGGSSDYAQNGYGKERGYDRYGGPRGGGDRYGSGIAARDEGRNYRGRPGPYDRPSRGARPSSFDRY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151171g00001 280 Gene3D - 116 151 - -
Stsc151171g00001 280 MobiDBLite consensus disorder prediction 135 280 - -
Stsc151171g00001 280 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Stsc151171g00001 280 SMART rrm1_1 8 81 IPR000504 GO:0003723
Stsc151171g00001 280 FunFam Glycine-rich RNA-binding protein RZ1B isoform C 118 156 - -
Stsc151171g00001 280 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Stsc151171g00001 280 MobiDBLite consensus disorder prediction 82 108 - -
Stsc151171g00001 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Stsc151171g00001 280 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 272 - -
Stsc151171g00001 280 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
Stsc151171g00001 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Stsc151171g00001 280 SUPERFAMILY Retrovirus zinc finger-like domains 105 138 IPR036875 GO:0003676|GO:0008270
Stsc151171g00001 280 Gene3D - 1 115 IPR012677 -
Stsc151171g00001 280 FunFam glycine-rich RNA-binding protein RZ1C 1 115 - -
Stsc151171g00001 280 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Stsc151171g00001 280 MobiDBLite consensus disorder prediction 158 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151171g00001 Stsc-Chr151171 8964 13940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151171g00001 9 88 C2H2 Transcription Factor Family AT2G19380 42.500 1.18e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151171g00001 - - gmx:100809519 430.639