Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151170g00015 ATGCTTAAGAGGCGTGCTGCTGCCCTTGCTGTTCCCACAAATGACATGGCTGTGCAAGCTCGTCTTCGCTGCCTTGGCGAGCCTATAACTCTCTTCGGTGAGAGGGAGATGGAGAGGAGAGACAGGTCACGCATGATTATGGCGAAGCTGGACGCTGAAGGTCAGCTTGAGAAGCTGATGAGAGCTCATGAGGAGGAAGAGGCTGCAGCTTCTATTTCAAGGGATATGGCTGAGGAAGAACTGGAATATCCTTTCTACACTGAAGGATCACATTCTCTTCGGAATGCCAGAATTGACATTGCTAAATATTCTTTAGCTAGAGCAACATCACGTCTTCAACGTGCCAAGAGGAAAAGGGATGATCCAGATGAAGATGCGGATGCAGAGATTAATTGGGCACTGAACCAGGCTGGAAATTTTAGTCTTGAATTTAGTGAAGTCGGTGATGATCGACCACTTTCTGGTTGCTCCTTTTCTCCAGATGGGAAACGGCTTGCTACCTGTTCTCTAACTGGATCAGCCAAGTTGTGGACCATGCCTGACATAAGAAAAGTTTCTACTTTGAAAGGCCACACAGAGCGTGCTACTGATGTTGCTTATTCTCCTGTGCATAATCATGTAGCAACTGCATCTGCTGATCGGACTGCAAGATATTGGAATGATCAGGGAACTCTATTGAGGACATTTGACAGTCATCTTGACCGTCTTGCACGCATTGCCTTCCATCCATCGGGGAAGTACCTGGGTACTACTAGCTTTGACAAGACATGGAGATTATGGGACGTCGAAACAGGTGAGGAGTTGCTTCTTCAAGAAGGTCATAATAGAAGTGTATATGGATTGGCTTTCCATCATGATGGATCATTAGCTGCTTCTTGTGGACTGGATTCTCTAGCCCGTGTTTGGGATCTTAGAACTGGAAGAAGTATTCTTGCACTCGAAAGGCATGTTAAGCCAGTGAGTCATTGA 969 0.4634 MLKRRAAALAVPTNDMAVQARLRCLGEPITLFGEREMERRDRSRMIMAKLDAEGQLEKLMRAHEEEEAAASISRDMAEEELEYPFYTEGSHSLRNARIDIAKYSLARATSRLQRAKRKRDDPDEDADAEINWALNQAGNFSLEFSEVGDDRPLSGCSFSPDGKRLATCSLTGSAKLWTMPDIRKVSTLKGHTERATDVAYSPVHNHVATASADRTARYWNDQGTLLRTFDSHLDRLARIAFHPSGKYLGTTSFDKTWRLWDVETGEELLLQEGHNRSVYGLAFHHDGSLAASCGLDSLARVWDLRTGRSILALERHVKPVSH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151170g00015 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 270 IPR001680 GO:0005515
Stsc151170g00015 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 220 IPR001680 GO:0005515
Stsc151170g00015 322 SMART pr04_2 13 66 IPR014906 -
Stsc151170g00015 322 Coils Coil 49 82 - -
Stsc151170g00015 322 Gene3D - 1 58 IPR036285 -
Stsc151170g00015 322 SMART WD40_4 181 220 IPR001680 GO:0005515
Stsc151170g00015 322 SMART WD40_4 222 261 IPR001680 GO:0005515
Stsc151170g00015 322 SMART WD40_4 264 303 IPR001680 GO:0005515
Stsc151170g00015 322 SMART WD40_4 139 178 IPR001680 GO:0005515
Stsc151170g00015 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 312 IPR001680 GO:0005515
Stsc151170g00015 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 308 - -
Stsc151170g00015 322 ProSitePatterns Trp-Asp (WD) repeats signature. 290 304 IPR019775 -
Stsc151170g00015 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 187 IPR001680 GO:0005515
Stsc151170g00015 322 Gene3D - 127 322 IPR015943 GO:0005515
Stsc151170g00015 322 ProSitePatterns Trp-Asp (WD) repeats signature. 248 262 IPR019775 -
Stsc151170g00015 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 220 - -
Stsc151170g00015 322 SUPERFAMILY WD40 repeat-like 141 321 IPR036322 GO:0005515
Stsc151170g00015 322 SUPERFAMILY PRP4-like 3 51 IPR036285 -
Stsc151170g00015 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 266 - -
Stsc151170g00015 322 CDD WD40 152 322 - -
Stsc151170g00015 322 PANTHER WD40 REPEAT PROTEIN 3 320 - -
Stsc151170g00015 322 Pfam WD domain, G-beta repeat 184 220 IPR001680 GO:0005515
Stsc151170g00015 322 Pfam WD domain, G-beta repeat 154 177 IPR001680 GO:0005515
Stsc151170g00015 322 Pfam WD domain, G-beta repeat 272 303 IPR001680 GO:0005515
Stsc151170g00015 322 Pfam WD domain, G-beta repeat 224 261 IPR001680 GO:0005515
Stsc151170g00015 322 Pfam pre-mRNA processing factor 4 (PRP4) like 18 42 IPR014906 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151170g00015 Stsc-Chr151170 87264 90133 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151170g00015 165 321 U-box Gene Family AT2G33340 28.221 5.34e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151170g00015 K12662 - gmx:100788948 527.709