Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc151165g00013 | ATGGCGCACACCTCTTATTCATTGGAAATCACTTACATTGAAGATCTAACCGTGCCACTAGATTTTTGTTTCAGTGATTGCTTCTCCATCAACTTCAGTTGCACCGTAGATTTGATCCAAGCTATCCAACCCACAAACCCAGCCGCTGATATTTACTTTTCTTCTTCTTCAATTACATTCGATGAAGCCTTCTTGGTTCCTTCTTATATCTTATGTAACTCTACTCCACTCACAGATTTCAATACGGAAAACACCGAGATTTTACATCAAATATTCTCTTCTGTGCCCATATCCTCTGAGTTATTGGAAGAAATTTTAGCTCAGTTGGCTGAAAGCGCAAGAAAGATTCTAAGCCGTGAACCGTGTGGCTCGCTGGAGATGGATGTGAACCTTCGTGTTGTCACGCACATTGCTGATGAAGAAGATGATTTTGATGTCTATACTAATGATGATGATCACCGTCAAAATGTTTCTGAAGTAGGCCGACTCGTGAATCTATTGGAGAGACCCAAGATAGTTGATGAGGAAGAAGATGGTGTTGAACAATGCGCTGTTTGCTTGGAAGAGTTTGGACATGGTAATGAAGATTCAAGTGGCGAAGTTGTTCGCACAAATTGCTCGCATGTTTTTCATGAACGTTGTATATTTCGTTGGCTCGAGCGTTGTATCAAACAAGAATCGCCCTACTCTTGTCCATTGTGCCGCAGTAACATGTTTCCAACTTCAGAGCATGATGAATAG | 741 | 0.413 | MAHTSYSLEITYIEDLTVPLDFCFSDCFSINFSCTVDLIQAIQPTNPAADIYFSSSSITFDEAFLVPSYILCNSTPLTDFNTENTEILHQIFSSVPISSELLEEILAQLAESARKILSREPCGSLEMDVNLRVVTHIADEEDDFDVYTNDDDHRQNVSEVGRLVNLLERPKIVDEEEDGVEQCAVCLEEFGHGNEDSSGEVVRTNCSHVFHERCIFRWLERCIKQESPYSCPLCRSNMFPTSEHDE | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc151165g00013 | 246 | SUPERFAMILY | RING/U-box | 182 | 240 | - | - | |
| Stsc151165g00013 | 246 | CDD | RING-H2 | 183 | 235 | - | - | |
| Stsc151165g00013 | 246 | SMART | ring_2 | 183 | 234 | IPR001841 | - | |
| Stsc151165g00013 | 246 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 240 | IPR013083 | - | |
| Stsc151165g00013 | 246 | ProSiteProfiles | Zinc finger RING-type profile. | 183 | 235 | IPR001841 | - | |
| Stsc151165g00013 | 246 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 131 | 242 | - | - | |
| Stsc151165g00013 | 246 | Pfam | Ring finger domain | 182 | 235 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc151165g00013 | Stsc-Chr151165 | 94287 | 95027 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc151165g00013 | 181 | 239 | C3H Transcription Factor Family | AT4G12190 | 37.288 | 1.34e-08 | 48.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc151165g00013 | - | - | adu:110273516 | 269.626 |