Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151165g00012 ATGATTGAAGACAACGCCAAATTCGACGACGCAGATCGAATCAAGGGTTCTTGGAGCCCCCAAGAAGATGCAACGCTTTTGAAGCTCGTTGCGCAGCACGGAGCACGGAACTGGTCCACCATTAGCAGCGGGATACCGGGCCGATCGGGAAAGTCCTGCCGTCTGCGGTGGTGCAACCAGCTCAGCCCCGATGTTCAGCACCGGCCTTTCACCCCTGCGGAGGATGAAGTCATCCTTAATGCGCACGCCGTACACGGCAACAAGTGGGCCACCATTTCAAGACTCCTCCCTGGCCGAACCGATAACGCTATCAAGAATCACTGGAACTCCACGCTCCGCCGCCGTAACGGTGCCACAGGGGGAGTATCCTCCGCCACCACATCGTCGTCATCGGAATTCAGCCCGACATTTGTTTGCCAAAAGCGCAAGGCCGAGCCGTCAGAGTTGCCAGGGAATTTCAACAACAAGAGGCCGTGTTTGCCGGCGGTTTCGGTCACAGAAAACGAGCGTCACCGTCACAAGGAGGAGGAGGTTTTTGTTTGCCAAAAGCGCAAGGCTGAACCGCTAGAGCGGCCAAAGAGTTTCAACAAGAAGCCGTGTTTGCAGGCCTCTGCATTTACAGAGGAAGAGGAAGGAGAAGAAGAGGAGGGGGGAGGAGGAGGAGGCGTTACGACCCTGAGTTTGCTTCCGCCAGGGGAGAAGCCTTTGGCGACGGAGGGAATGTGGCGGAGGGAAGAGGAAGTGAATGGGAACGATGGATATCCATGGTTGGTGAAGATGATGCAGCGCATGATAGCAGAGGAGGTTAAAAGATACATTGAGAGCTTACAACATAAGACTCCACCATCCTTTGACTTTGATCCATCTAGTAAACATTTTTAG 882 0.5431 MIEDNAKFDDADRIKGSWSPQEDATLLKLVAQHGARNWSTISSGIPGRSGKSCRLRWCNQLSPDVQHRPFTPAEDEVILNAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRNGATGGVSSATTSSSSEFSPTFVCQKRKAEPSELPGNFNNKRPCLPAVSVTENERHRHKEEEVFVCQKRKAEPLERPKSFNKKPCLQASAFTEEEEGEEEEGGGGGGVTTLSLLPPGEKPLATEGMWRREEEVNGNDGYPWLVKMMQRMIAEEVKRYIESLQHKTPPSFDFDPSSKHF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151165g00012 293 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Stsc151165g00012 293 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Stsc151165g00012 293 CDD SANT 69 112 IPR001005 -
Stsc151165g00012 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 65 IPR017930 -
Stsc151165g00012 293 Gene3D - 14 66 - -
Stsc151165g00012 293 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc151165g00012 293 PANTHER MYB PROTEIN-RELATED 15 145 - -
Stsc151165g00012 293 FunFam MYB transcription factor 15 66 - -
Stsc151165g00012 293 SMART sant 14 63 IPR001005 -
Stsc151165g00012 293 SMART sant 66 114 IPR001005 -
Stsc151165g00012 293 Gene3D - 69 115 - -
Stsc151165g00012 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Stsc151165g00012 293 MobiDBLite consensus disorder prediction 205 234 - -
Stsc151165g00012 293 MobiDBLite consensus disorder prediction 114 134 - -
Stsc151165g00012 293 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Stsc151165g00012 293 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc151165g00012 293 CDD SANT 17 59 IPR001005 -
Stsc151165g00012 293 FunFam Transcription factor MYB44 69 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151165g00012 Stsc-Chr151165 81480 82378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151165g00012 11 132 MYB Transcription Factor Family AT3G50060 64.754 3.91e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151165g00012 Myb_DNA-binding 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151165g00012 - - adu:107457624 353.599