Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151165g00010 ATGGACTTCAATGGGGAAAACACAGAAATTTTACATCAAATCTTCTCTTCATTGCCCATATCTTATGAGTTATTGGACGAAATTTTACCTGAGTTGGCTGAAAACGCTTGTGGCTCGTTGGAGATGGACGTGAACTTTCATGTTCTCACGCGCATTGCTGATGATGAAGATTTTGAGGTCTATAATGATGATCACCAACATAATGTTTATGAAGTAGGCGAACTCGTGAATCTGTTGGAGAGAGTCAAAGTTGACGAGGAAGAAGATGGTGTTGACCAATGCGCTATTTGCTTGGAAGAGTTTGGACATGGTAATGAAGATTCAAGTGGCGAAGTTGTTCGCACAAATTGCTTGCATGTTTTCCATGAACGCTGTATATTCCGTTGGCTCGAGCGTTGTGTCAAATGTGAATCGCCCTATTCTTGTCAACATGTTTCCAATTTCAGAGGAAGATGA 456 0.4101 MDFNGENTEILHQIFSSLPISYELLDEILPELAENACGSLEMDVNFHVLTRIADDEDFEVYNDDHQHNVYEVGELVNLLERVKVDEEEDGVDQCAICLEEFGHGNEDSSGEVVRTNCLHVFHERCIFRWLERCVKCESPYSCQHVSNFRGR 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151165g00010 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 146 IPR013083 -
Stsc151165g00010 151 SUPERFAMILY RING/U-box 93 137 - -
Stsc151165g00010 151 PANTHER SI:CH211-59O9.10 55 136 - -
Stsc151165g00010 151 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Stsc151165g00010 151 CDD RING-H2 94 131 - -
Stsc151165g00010 151 SMART ring_2 94 136 IPR001841 -
Stsc151165g00010 151 Pfam Ring finger domain 92 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151165g00010 Stsc-Chr151165 69035 69897 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151165g00010 78 132 C3H Transcription Factor Family AT4G12190 36.207 1.41e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151165g00010 - - ahf:112762800 166.392