Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151165g00009 ATGGAAAACTTCTACTATTCTGGATGGCCTCAATGCAGCAACTCTGCACCAAACAGTAACAATAATTCTCCCTTTTCAGTACCAACAACACAGATAGTGCCTCATGCTTATGACTCAGCCTTTGCCTCTCTTCAGTTCCAATATCCATGGACTTTACCCTTTGAAGGGTTTCCAGAAGATAGAGCTGCAAGTGCTTCTAAGAGCCATAGCCAAGCAGAGAAAAGAAGAAGGGACAGGATCAATGCACAGCTTGCAACTCTTAGAAAACTGATTCCTAAGTCTGATAAGATGGACAAGGCTGCATTACTAGGGAGTGTAGTAGACCAAGTGAAGGATCTAAAGAGAAAAGCAATGGATGTGAGCAAAAGCATCACAGTTCCAAGTGAAACTGATGAAGTAACAATTGAGTGTGATCATCCTGATCAAGATGATCAAAGCTATGCTAAAGTGAAGATACTGAAGCACAACATAGTAATCTCAGTTTGCTGTGATGATAGACCAGAACTGTTCAGTGAACTCATTCAAGTCCTCAAAGGGTTGAGGCTCACAGCAGTTAAAGCTGACATAGCAAGTGTTGGTGGAAGAATCAAGAGCATATTGGTGCTATGCTCAAAGGAAAATGAAGAAGGTGGTGTTTGCCTCAGCACTCTCAAACAATCACTGAAATCTGCTGTCAACAAAATTGCTTCATCATCTGTGACATCAACTTGTCCCACAAGAAGCAAGAGGCAAAGGTTCTTCTTGCCTTCACATTGCATACAGTGA 765 0.4183 MENFYYSGWPQCSNSAPNSNNNSPFSVPTTQIVPHAYDSAFASLQFQYPWTLPFEGFPEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDQVKDLKRKAMDVSKSITVPSETDEVTIECDHPDQDDQSYAKVKILKHNIVISVCCDDRPELFSELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKENEEGGVCLSTLKQSLKSAVNKIASSSVTSTCPTRSKRQRFFLPSHCIQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151165g00009 254 CDD bHLH_AtAIG1_like 59 135 - -
Stsc151165g00009 254 Pfam Helix-loop-helix DNA-binding domain 67 113 IPR011598 GO:0046983
Stsc151165g00009 254 Gene3D - 59 122 IPR036638 GO:0046983
Stsc151165g00009 254 PANTHER TRANSCRIPTION FACTOR BHLH30 58 250 IPR045847 GO:0003700|GO:0006355
Stsc151165g00009 254 SMART finulus 70 119 IPR011598 GO:0046983
Stsc151165g00009 254 CDD ACT_UUR-ACR-like 158 195 - -
Stsc151165g00009 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 117 IPR036638 GO:0046983
Stsc151165g00009 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151165g00009 Stsc-Chr151165 66544 67996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151165g00009 1 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 41.132 1.22e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151165g00009 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151165g00009 - - gmx:100305722 337.035