Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151164g00009 ATGAGTTGCCTACAGTCAGGGGAGCCATTACGAGGAGCAGTTGAAATGTTTCCACCGTCAGAATCTGTTTCGACCAGTGAATTCTCGGCAAGTGGTTATTCTTTCCTTGGTGGACAAATTGGCAACAAGAAGCCCGACACTGGCAATATAGAGGAAGCTGAATCATCCTTACGCGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTCTGTTAGGAAGATATGAATATCAGAAGGGAAATGTAGTAGCAGCTTTACATGTCTTTGAAGGAATAGATATAGTTGCTGTGACTCCCAAGATTAAAGATGCTCTTTCCAAAAGCAGAGAACGGCGTAAGAGACATTCCCAGAATAATGATGAACTGCAAATGTCTGTACATGCTGTTGCCTTATTGTTAGAAGCTGTCTTCCTAAAAGCAAAATCTTTGCAGGTTCTTGGAAGGTTTAAAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATAGTGGAATCTTCAATACCTGAAGGCTTGCCTGATAACTTTGGATCTGAATGTAAATTGCAGGAGACTTTGAGCAAGGCAGTTGAGGTACTTCCGGAATTATGGAAACTTGCTGGTTGTCAGCGAGAAGCTATTTTGTCTTACCGGCGAGCACTCCTTCATGAATGGAATCTTGATGCAGAAACAATAGCAAAGATTCAGAAAGAATTTGCCCTTTTTCTTCTATATAGTGGCGGGGAAGCAATGCAACCTGATCTTCGTTCCCAAATGGACGGATCGTTCGTGCCCAGAAACAACATTGAAGAGGCTATACTTCTTTTGATGATTTTGTTAAGAAAAGTCACTCTAAATAGAATTGAGTGGGATCCTTCAATTTTGGACCACCTTTCATTTGCCCTATCTGTTTCTGGGGATTTGATGGCTTTAGCCAATCAATTCGACGAATTGCTTCCTGGGACTATCCATCGAAGGGAGAGGTTCTATTTTTTAGCTCTTTGTTATTATGGAGCAGGGAAGAACGTGGAAGCACTGGATCTTCTTAGAAAAGTGCTGAGTAGTAGAGAGGACCCAAGACATGTTCCTAGTTTGTTAATGGCTTCTAAGATTTGTTGCGAGAACTTTACTGTTACCAAAGACCCCGGGGTAAGCTTTGCTCAGATGGCACTTGAGAACTTGGATGGAAGATGTAATCAGTTAGAGAATTTGGCCAATTTCTTACTTGGTGTTTCACTTTCTGCATACTCGAAATCGGCCATTTCTGATGCTGAAAGGGTTAAGAGACAATCTGAGGCACGTCATGCCCTTGAAACTGCCTGCAAATTGAGCAAAATGGAAGACCCTGTTGTATTATACCATCTCAGTTTAGAATATGCTGAGCAACGGAAGTTGGATGCTGCCCTTTATTATGTTAAGTGCCTTGTAAAACTTGAAGTTGGCTCTAATGTTAAAGGTTGGTTACTGTTAGCCCGAGTATTATCCGCGCAAAAGCGGTTCTTGGATGCTGAATCTATTATAAATGCTGCATTGGATCAGACTGGGAAATGGGATCAAGGTGATTTGTTGCGAACAAAGGCGAAACTTCAGATTGCTCAGGGCCAGTTAAAGAGTGCGATTGAGACATATACTCAGCTTCTTGCTGTTCTTCAAGTTCACCATAAAAGTTTTGGTTCTCGGAATAAGCTATTTAAGGACAAAAGAGATCAAATTAGGAATTTGGAAGTTGAAGTATGGCATGATCTTGCTTATGTTTACATCAATCTTTCACAGTGGCGTGACGCAGAGGCCTGCCTTTCAAAATCTCGTGCCATCAAACCATACTCTTCTACTAGATGTCACGCAATAGGTACAATGTATGAAGCAAAAGGTCTTTACAAGGAAGCTCTAAAGGCATTTCGTGACGCTTTGGACGTCGATCCTGACCATGTCCCTAGCTTAATCTCCTCAGCCATGGTTCTTAGACGTTGCAGTGGTCAATGGAACCCTGCAGTCAGAAGCTTTTTGATGGAGGCATTGCGGCACGACAGATTTTGTGCTTCTGCTTGGTATAATCTTGGCCTTCTCCACAAGGCTGATGGTAGAGAATCAGCATTAGTTGAAGCTGCTGAATGTTTTCAGGCAGCACAGTCTCTTGAAGAATCTGAGCCAGTTGAACCTTTCAGATGA 2145 0.4233 MSCLQSGEPLRGAVEMFPPSESVSTSEFSASGYSFLGGQIGNKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNVVAALHVFEGIDIVAVTPKIKDALSKSRERRKRHSQNNDELQMSVHAVALLLEAVFLKAKSLQVLGRFKEAAQSCKVILDIVESSIPEGLPDNFGSECKLQETLSKAVEVLPELWKLAGCQREAILSYRRALLHEWNLDAETIAKIQKEFALFLLYSGGEAMQPDLRSQMDGSFVPRNNIEEAILLLMILLRKVTLNRIEWDPSILDHLSFALSVSGDLMALANQFDELLPGTIHRRERFYFLALCYYGAGKNVEALDLLRKVLSSREDPRHVPSLLMASKICCENFTVTKDPGVSFAQMALENLDGRCNQLENLANFLLGVSLSAYSKSAISDAERVKRQSEARHALETACKLSKMEDPVVLYHLSLEYAEQRKLDAALYYVKCLVKLEVGSNVKGWLLLARVLSAQKRFLDAESIINAALDQTGKWDQGDLLRTKAKLQIAQGQLKSAIETYTQLLAVLQVHHKSFGSRNKLFKDKRDQIRNLEVEVWHDLAYVYINLSQWRDAEACLSKSRAIKPYSSTRCHAIGTMYEAKGLYKEALKAFRDALDVDPDHVPSLISSAMVLRRCSGQWNPAVRSFLMEALRHDRFCASAWYNLGLLHKADGRESALVEAAECFQAAQSLEESEPVEPFR 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151164g00009 714 Coils Coil 105 125 - -
Stsc151164g00009 714 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Stsc151164g00009 714 SUPERFAMILY TPR-like 514 705 IPR011990 GO:0005515
Stsc151164g00009 714 SUPERFAMILY TPR-like 320 539 IPR011990 GO:0005515
Stsc151164g00009 714 SMART tpr_5 672 708 IPR019734 GO:0005515
Stsc151164g00009 714 SMART tpr_5 133 166 IPR019734 GO:0005515
Stsc151164g00009 714 SMART tpr_5 602 635 IPR019734 GO:0005515
Stsc151164g00009 714 SMART tpr_5 318 351 IPR019734 GO:0005515
Stsc151164g00009 714 SMART tpr_5 441 474 IPR019734 GO:0005515
Stsc151164g00009 714 SMART tpr_5 476 509 IPR019734 GO:0005515
Stsc151164g00009 714 SMART tpr_5 568 601 IPR019734 GO:0005515
Stsc151164g00009 714 SMART tpr_5 512 545 IPR019734 GO:0005515
Stsc151164g00009 714 Gene3D Tetratricopeptide repeat domain 553 711 IPR011990 GO:0005515
Stsc151164g00009 714 Pfam Tetratricopeptide repeat 605 635 IPR019734 GO:0005515
Stsc151164g00009 714 ProSiteProfiles TPR repeat profile. 602 635 IPR019734 GO:0005515
Stsc151164g00009 714 Gene3D Tetratricopeptide repeat domain 396 548 IPR011990 GO:0005515
Stsc151164g00009 714 Gene3D Tetratricopeptide repeat domain 132 395 IPR011990 GO:0005515
Stsc151164g00009 714 Coils Coil 376 396 - -
Stsc151164g00009 714 SUPERFAMILY TPR-like 134 350 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151164g00009 Stsc-Chr151164 74809 79378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151164g00009 1 714 Calmodulin-binding Proteins AT4G28600 57.655 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151164g00009 K21843 - gmx:100800762 1083.55