Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151164g00008 ATGGAAACTGCACCCGCTTGCTTCTTCTGCGTTGGAATCCCAGCAACTGCAACTGCCACAGCCACAGCAACTCCGAATTCCGTGCCTTTCCGTTGTGCCGTTAGAATCCCCTTCTCTTCTTCATTTGCCTCGCTCTGCCTTTTAGCTCGTACCAGACACGGCGGCGCCGGCGCCGGCGCATCTGTTCTCCGAACTTTGTGCTTGTCGTCGGTGTCATCTTCTTCTTCTTCTTCGTCGGTCACCGGCCTCAGCCTAATTCGAAGCGCCGCGAACAGTGAAACGAAGCTTCCGGTTCCAAGTAAGGCCAAGAGAAGTAGAAGAAGAACGCGAACGGGCTCTCCTCCTACTCCTCGGCCTCTTACTCCGGAGAAAACTAACAGTAACGGTAACGGTGATGGTAACAGCAATGAGAATGGTGACCCTCTAGGGTGGAAGGATCTCGGAAAGAGCGTGGTGAGATGGATTCGGGAGGGCATGAGGGCGATGGCGTCGGATTTCGCGGCGGCGGAGTTGCAGGGAGAAGCGGAATTCTCTGAGCTGATGCAGCGTATGGGGCCTGGACTCACTTTTGTGATCGAGGCTCAGCCTTATTTGAACGCTGTTCCGATGCCACTTGGTCTTGAAGTGATGTGCTTCAAGGCCTGCACACACTACCCAACTCTCTTTGATCACTTCCAGAGGGAGCTCCGTGAGGTTCTCCAGGACCTTCAGAATAAGTCCATGGTCGAAGACTGGCGCCAAACGCAGTCTTGGAAGCTGCTTAAAACTCTCGCCAATTCAGCTCAGCATCGGGCAGTGGCCAGAAAGATAGCCAATCCCCAACCCAAGAATGTCCAAGGCGACAACGTGAAAGCAATGCAGCAGAGGATCGAGGATTTCACCAACCGCATGTCTGAACTACTCCGTATTGAAAGGGATGCTGAATTAGAGTTCACTCAGGAGGAATTGGATGCTGTTCCTAGGCCACTGGATGATGCTTCCGATCCCTCAAGACCGACTGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTCTGTGACACCATTTGCAACTTAACTGCCATCAGTACCTCTACTGGACTTGGAGGAATGCATTTGGTGTTGTTCAAGGTTGAAGGTAACCATAGATTACCACCTACTACTCTTTCACCTGGAGATATGGTTTGTGTCAGAACATGTGACAGCAGGGGTGCAGTTACAACTTCTTGCATACAAGGATTTGTGAATAATCTCGGGGATGATGGCTGCAGTATTAGTGTTGCTTTAGAGTCACGCCATGGCGATCCTACATTCTCCAAACTCTTCGGAAAGAGTGTGCGCATAGACCGTATTCAAGGACTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCTCTAATGCTGCTTCAGAAGAATGGTTTGAGAAAGAAGAATCCTTCAATTGCTGTAGTATCTACACTCTTTGGAGAAAAGGAAGATGTTGCATGGCTTGAGAAGAACAATTTTGTTGACTGGGAAGAAGAAGAATTAAATGGACTGTTAGAAAATGAAACATTTGATAGTTCTCAGCAGAGAGCAATTGCATTGGGTTTGAATAAGAAGAGGCCTGTATTGGTTATCCAAGGGCCTCCAGGTACAGGCAAGACTGGTTTGCTCAAGCAACTTATAGTATGTGCCGTTCAACAAGGTGAAAGGGTTCTAGTGACAGCACCTACGAATGCAGCTGTTGACAACATGGTTGAAAAGCTTTCAAATGTTGGATTAAATATTGTGCGAGTTGGAAATCCTGCTCGTATTTCAAAAGCTGTGGGATCAAAGTCATTGGATGCAATTGTAAATGCGAAGCTTGCAAGTTTTCGAGAGGAGTATGAAAGGAAGAAGTCAAATCTGAGGAAGGATCTACGACTTTGTTTAAAGGATGATTCACTAGCTGCGGGAATACGCCAACTTCTGAAGCAGCTGGGAAGGTCCCTCAAGAAAAAAGAAAAGCAGACTATGAATGAAGTTTTATCTAGTGCGCAGGTTGTGCTTGCCACTAATACTGGAGCAGCTGATCCCTTAATTCGAAGGCTAGATACTTTTGACTTGGTTGTCATAGATGAAGCTGGACAGGCAATTGAACCATCTTGCTGGATTCCTATACTGCTTGGAAAGCGCTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTTATATTGTCCAGAAAGGCCTTAGAAGGTGGCCTAGGAATATCACTACTGGAGAGAGCTACAGCATTGCATGAAGGGATTCTCACCACCAGGCTAACAACACAATACCGTATGAATGATGCAATTGCTAGCTGGGCCTCGAAGGAGATGTATGGAGGATTGCTGAAGTCCTCTGAGTCTGTCTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTAAGCCCACATGGATAACACAATGTCCACTGCTATTGCTCGATACAAGAATGCCATATGGAAGTCTGTCAGTTGGTTGCGAAGAGCATCTGGACCCGGCAGGAACAGGCTCATTTTATAATGAAGGAGAAGCTGATATAGTTCTGCAGCATGTCCTTTCCTTGATTTATTCTGGTGTTAACCCAGCTGCCATTGTGGTGCAGTCACCTTATGTTGCGCAAGTGCAGCTTCTGAGGGACATGCTTGCAGAGGTACCGGAAGCTGCTGGTACCGAGGTTGCAACAATTGATAGTTTTCAAGGTCGCGAAGCTGATGCAGTAATTTTATCCATGGTACGGTCAAACACACTGGGAGCTGTTGGATTTCTTGGTGATAGCAGAAGAATCAATGTTGCCATCACGAGGGCGCGCAAACATGTAGCCGTGGTCTGTGACAGCTCAACAATATGCCACAACACCTTCCTGGCGAGACTTCTGCGTCACATTCGACACTTTGGTCGGGTGAAGCATGCAGAACCAGGTAGTTTTGGGGGTTCTGGACTTGGGATGAACCCGATATTACCCTCCATTAATTAG 2967 0.4762 METAPACFFCVGIPATATATATATPNSVPFRCAVRIPFSSSFASLCLLARTRHGGAGAGASVLRTLCLSSVSSSSSSSSVTGLSLIRSAANSETKLPVPSKAKRSRRRTRTGSPPTPRPLTPEKTNSNGNGDGNSNENGDPLGWKDLGKSVVRWIREGMRAMASDFAAAELQGEAEFSELMQRMGPGLTFVIEAQPYLNAVPMPLGLEVMCFKACTHYPTLFDHFQRELREVLQDLQNKSMVEDWRQTQSWKLLKTLANSAQHRAVARKIANPQPKNVQGDNVKAMQQRIEDFTNRMSELLRIERDAELEFTQEELDAVPRPLDDASDPSRPTEFLVSHSQPQQELCDTICNLTAISTSTGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRTCDSRGAVTTSCIQGFVNNLGDDGCSISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSIAVVSTLFGEKEDVAWLEKNNFVDWEEEELNGLLENETFDSSQQRAIALGLNKKRPVLVIQGPPGTGKTGLLKQLIVCAVQQGERVLVTAPTNAAVDNMVEKLSNVGLNIVRVGNPARISKAVGSKSLDAIVNAKLASFREEYERKKSNLRKDLRLCLKDDSLAAGIRQLLKQLGRSLKKKEKQTMNEVLSSAQVVLATNTGAADPLIRRLDTFDLVVIDEAGQAIEPSCWIPILLGKRCILAGDQCQLAPVILSRKALEGGLGISLLERATALHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSESVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSFYNEGEADIVLQHVLSLIYSGVNPAAIVVQSPYVAQVQLLRDMLAEVPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHVAVVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGSGLGMNPILPSIN 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151164g00008 988 Gene3D - 336 448 - -
Stsc151164g00008 988 CDD SF1_C_Upf1 764 960 IPR047187 -
Stsc151164g00008 988 SMART AAA_5 529 744 IPR003593 GO:0016887
Stsc151164g00008 988 Gene3D - 762 970 IPR027417 -
Stsc151164g00008 988 SMART ultradead3 510 762 IPR014001 -
Stsc151164g00008 988 FunFam DNA helicase A 762 970 - -
Stsc151164g00008 988 FunFam DNA-binding protein SMUBP-2 isoform X2 316 448 - -
Stsc151164g00008 988 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 119 971 - -
Stsc151164g00008 988 MobiDBLite consensus disorder prediction 94 144 - -
Stsc151164g00008 988 MobiDBLite consensus disorder prediction 315 335 - -
Stsc151164g00008 988 Coils Coil 283 310 - -
Stsc151164g00008 988 MobiDBLite consensus disorder prediction 122 137 - -
Stsc151164g00008 988 CDD DEXXQc_SMUBP2 514 763 - -
Stsc151164g00008 988 Pfam AAA domain 740 943 IPR041679 -
Stsc151164g00008 988 Pfam AAA domain 514 730 IPR041677 GO:0004386
Stsc151164g00008 988 Gene3D - 297 746 IPR027417 -
Stsc151164g00008 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 951 IPR027417 -
Stsc151164g00008 988 Coils Coil 615 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151164g00008 Stsc-Chr151164 64875 71319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151164g00008 500 703 Core DNA Replication Machinery Family AT1G08840 26.699 1.95e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151164g00008 - - aip:107625008 1757.65