Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151163g00003 ATGGGTCGTGGAAGAATACCAATGGAGCTAATTCAAAAGGAGAAAGCTAGGAAGACAACATTTCTAAAGAGAAAGAATGGATTAATGAAGAAAGTGTCTGACTTCTCCACTCTTTGTGGTGTTGATGTTTGTGTAATTATCTATTGCCCCAACTTTGATGGCGAAAGCTCCAACAAACCTGACACATGGCCCCGAGATACCAACGAGATTCGCCGAATCATTCGAAGGTTCCGTGAAACAACGAGTGATAGACCTGCAAGGATCTATGACGCTGAAGAGTATTATAGAGATAGGATCAAGAAACTTGAAGGTGACATTTCAAAGGTGCAAAAGGAGAAGCTTAAGATCATGTATCCTACTTGGGATGTCTCATTTAAAGATCTAAGGGAGGATCATCTTAGAATGTTTGTTAGTATTTTGGATTCTAAGATTGTTGCTTCCAATCAAAGAATCCACATGCTAAAGAAAGATTCTAAGGGAAAAGCAACCCTAGAATCAAAAGACAATGATACTCCTCATTGGGGTTCATCAAACCCTAGTAGCCAATTACCATTCTACCCTTTGCAAATAGGGCAAAGTTCATCACAATCGTCCATTCTTCCTTTTGATCAAAATGGGATGGTGAATTTGGAGCAACAAGTTGGTACGTTTAGCACTCATGACCATGGAGATGGAAGCAATAATCAAAACTCTTCATCACTATGTTATTACAAAGGGAATATGGAATCAGTGCAGCCATATAGTTTTGCTCTACCACAATATCAAGATTTGCCTTCGGAGTTTCAAGTTAATGTACTATATAATGCACATGATGATCAAGGTAAAATGTTCAACTACATGCATGAAAGGAAGTTGTAG 858 0.3858 MGRGRIPMELIQKEKARKTTFLKRKNGLMKKVSDFSTLCGVDVCVIIYCPNFDGESSNKPDTWPRDTNEIRRIIRRFRETTSDRPARIYDAEEYYRDRIKKLEGDISKVQKEKLKIMYPTWDVSFKDLREDHLRMFVSILDSKIVASNQRIHMLKKDSKGKATLESKDNDTPHWGSSNPSSQLPFYPLQIGQSSSQSSILPFDQNGMVNLEQQVGTFSTHDHGDGSNNQNSSSLCYYKGNMESVQPYSFALPQYQDLPSEFQVNVLYNAHDDQGKMFNYMHERKL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151163g00003 285 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 147 - -
Stsc151163g00003 285 CDD MADS 2 64 - -
Stsc151163g00003 285 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Stsc151163g00003 285 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Stsc151163g00003 285 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Stsc151163g00003 285 MobiDBLite consensus disorder prediction 156 179 - -
Stsc151163g00003 285 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc151163g00003 285 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc151163g00003 285 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc151163g00003 285 SUPERFAMILY SRF-like 2 100 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151163g00003 Stsc-Chr151163 22580 23437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151163g00003 1 150 Type I MADS-box Gene Family AT5G55690 37.748 9.72e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc151163g00003 SRF-TF 6.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151163g00003 - - aip:107640879 358.992