Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151162g00014 ATGGATGTGGACATATTCAAAACCTCTACTACTACTGCTAATGACAGCAGCAGCATGGACATGATGGCAATGATGATGCACATGGAAAAGCTTCCTCCTCATGAATTATCTCCTGAACCTCCTTTTTATAACACACCCATCCTCACTACCTACCCACCACATCAAACCGACTTCCATAATCATAACAATAATGTAGCACCTCAAGTTGAACCAAACTTGATTAATCCAACATCACATCCCAGTTTCATCTTCCAACATCAACAACATTCCATGGCACCACCACCACCTGTTGATGATATCACTTGTTCTTTCCCCTACCCTCCTCCTCCTAACAACAAGAAGAACTCGATGGCGGCGATGAGGGAAATGATATTCCGGGTGGCAGTTATGCAACCGGTTCACATAGACCCTGAGTCTATAAAGCCACCGAAGAGGAGGAACGTGAAGATCTCAAAGGACCCTCAGAGCGTGGCGGCGAGGCACAGGAGAGAGAGGATCAGCGAGAGGATAAGGATTCTTCAGAGATTAGTCCCCGGTGGAACTAAAATGGACACAGCTTCTATGTTAGATGAGGCCATTCACTACGTCAAGTTCTTGAAGAAGCAAGTGCAGACACTCGAACAAGCAGGGGGGAATAGGCCACCAAGTAATAATAATAATAATAACAATCTTGTAGGTCCCTTCACGGGCTTCTCATCATCACCATCATCATCATCCATAAGTGCAAGTTATTCTGCTTTGGTTAAAGGTTGTCACCAACCTTACCCTATGTTGATGGGTTCTAAGCAATTGCTCAGCTGA 801 0.4494 MDVDIFKTSTTTANDSSSMDMMAMMMHMEKLPPHELSPEPPFYNTPILTTYPPHQTDFHNHNNNVAPQVEPNLINPTSHPSFIFQHQQHSMAPPPPVDDITCSFPYPPPPNNKKNSMAAMREMIFRVAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGGNRPPSNNNNNNNLVGPFTGFSSSPSSSSISASYSALVKGCHQPYPMLMGSKQLLS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151162g00014 266 Pfam Helix-loop-helix DNA-binding domain 160 199 IPR011598 GO:0046983
Stsc151162g00014 266 MobiDBLite consensus disorder prediction 206 232 - -
Stsc151162g00014 266 FunFam BHLH transcription factor 153 217 - -
Stsc151162g00014 266 SMART finulus 156 205 IPR011598 GO:0046983
Stsc151162g00014 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 208 IPR036638 GO:0046983
Stsc151162g00014 266 Gene3D - 149 218 IPR036638 GO:0046983
Stsc151162g00014 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Stsc151162g00014 266 CDD bHLH_AtIND_like 151 207 - -
Stsc151162g00014 266 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 18 245 IPR045843 GO:0003700|GO:0006355
Stsc151162g00014 266 Coils Coil 189 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151162g00014 Stsc-Chr151162 89909 90806 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151162g00014 15 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 52.857 3.25e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151162g00014 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151162g00014 - - gmx:100796649 210.305