Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc151162g00014 | ATGGATGTGGACATATTCAAAACCTCTACTACTACTGCTAATGACAGCAGCAGCATGGACATGATGGCAATGATGATGCACATGGAAAAGCTTCCTCCTCATGAATTATCTCCTGAACCTCCTTTTTATAACACACCCATCCTCACTACCTACCCACCACATCAAACCGACTTCCATAATCATAACAATAATGTAGCACCTCAAGTTGAACCAAACTTGATTAATCCAACATCACATCCCAGTTTCATCTTCCAACATCAACAACATTCCATGGCACCACCACCACCTGTTGATGATATCACTTGTTCTTTCCCCTACCCTCCTCCTCCTAACAACAAGAAGAACTCGATGGCGGCGATGAGGGAAATGATATTCCGGGTGGCAGTTATGCAACCGGTTCACATAGACCCTGAGTCTATAAAGCCACCGAAGAGGAGGAACGTGAAGATCTCAAAGGACCCTCAGAGCGTGGCGGCGAGGCACAGGAGAGAGAGGATCAGCGAGAGGATAAGGATTCTTCAGAGATTAGTCCCCGGTGGAACTAAAATGGACACAGCTTCTATGTTAGATGAGGCCATTCACTACGTCAAGTTCTTGAAGAAGCAAGTGCAGACACTCGAACAAGCAGGGGGGAATAGGCCACCAAGTAATAATAATAATAATAACAATCTTGTAGGTCCCTTCACGGGCTTCTCATCATCACCATCATCATCATCCATAAGTGCAAGTTATTCTGCTTTGGTTAAAGGTTGTCACCAACCTTACCCTATGTTGATGGGTTCTAAGCAATTGCTCAGCTGA | 801 | 0.4494 | MDVDIFKTSTTTANDSSSMDMMAMMMHMEKLPPHELSPEPPFYNTPILTTYPPHQTDFHNHNNNVAPQVEPNLINPTSHPSFIFQHQQHSMAPPPPVDDITCSFPYPPPPNNKKNSMAAMREMIFRVAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGGNRPPSNNNNNNNLVGPFTGFSSSPSSSSISASYSALVKGCHQPYPMLMGSKQLLS | 266 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc151162g00014 | 266 | Pfam | Helix-loop-helix DNA-binding domain | 160 | 199 | IPR011598 | GO:0046983 | |
Stsc151162g00014 | 266 | MobiDBLite | consensus disorder prediction | 206 | 232 | - | - | |
Stsc151162g00014 | 266 | FunFam | BHLH transcription factor | 153 | 217 | - | - | |
Stsc151162g00014 | 266 | SMART | finulus | 156 | 205 | IPR011598 | GO:0046983 | |
Stsc151162g00014 | 266 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 154 | 208 | IPR036638 | GO:0046983 | |
Stsc151162g00014 | 266 | Gene3D | - | 149 | 218 | IPR036638 | GO:0046983 | |
Stsc151162g00014 | 266 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 150 | 199 | IPR011598 | GO:0046983 | |
Stsc151162g00014 | 266 | CDD | bHLH_AtIND_like | 151 | 207 | - | - | |
Stsc151162g00014 | 266 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 18 | 245 | IPR045843 | GO:0003700|GO:0006355 | |
Stsc151162g00014 | 266 | Coils | Coil | 189 | 209 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc151162g00014 | Stsc-Chr151162 | 89909 | 90806 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc151162g00014 | 15 | 208 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G50330 | 52.857 | 3.25e-48 | 158 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Stsc151162g00014 | HLH | 1.7e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc151162g00014 | - | - | gmx:100796649 | 210.305 |