Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151162g00009 ATGTCAGACGAAGAAGCTGCTGCAACCACCGCCGGCGCCGGTAGGCGAAGGGCCAGAGGTCCCGCTTCCTCCGCCCGCAGCGAGGCCCTAGAGCGTCTCAAAGCCCGCATCCGCGGCGGGCCCCGATCTGATGGGGCCACCCCCCAGATCAGACTCGAAAACCCCATCTACGACATTGTTGAGGAGGAAGATTACAACGCCCTTGTTGCCAAGCGCCGTGAGGAGGCCTGCGCCTTCATTGTTGATGACGACGGCCTTGGCTACGGTGACGAAGGCGAGGAAGAGGACTGGTCTAAGGCAGGCTACTCCCTCTCCTCTGACGAATCAGATGGCGCTGAAAATGAAGGCAGGCCAAAGCGGAAGAAGGTTGAAAAGAAAGAACAGAATCCCAACCAGAAACGCACGTCGGCTGCGCTCTCCGCCGCCGCTGTCGGCGCCCAGAGGCTGTCCTCCATGTTCACCTCATCGACGTTCAAGAAGAGCAGGGACGACAAGGCTCCCGACAGCATCGTTGACGATGTTCTCGCGGAGTTTGCAGCCGACGAGACCGATAGGGAACGGCGCAGAAGAACCCATCCGAAAGCCATTTCCAATTCGAATTCGAATTTATCCTCTGCTACAAATTATGCTCCGCGGGTTAATTGCGTTTTCGGTAGCAATTCGTCAATTGCTGCAGCGTCTGATTTGATGAGAGGTTCTTCGTTGCTCAACACCGCTGTAAATTGTGATGTTGAGTCCGTTAGGGTTGTTAGCAATGACGTCAGTGATTTGGGTTCAGAACAGAAGAAATGCGAGACTGTTAAAGAAAATGAGGTTTCTATAGAAGGCTCGGATATTGGGAACGTTTTTAGTTCTGAGAATGGTGATGCATCCATTGAGCAAGTTCCGAGTAATGGTCATGTTGGTGAGGAGGAGCTTGTGAAGGACTCTAAGGTAGAGGAAAAACCTGTTGCTTTGAAAAAGGAGTTGTTTTCTTTGAATGCGAAGCTTAAGGATGAAAAAGAGGACCCTGCTTTGAGTGCTACTGCGGGTTGGCAAGCAGTGAGGAATGGTGGTGCAGCTAATGTAAATGTTGTGGATTCGAAAGAACACTCAGAATTCAATCTGGAGGAAGATGGTTCGCTACCATTCTACATACTCGATGCCTATGAGGAGTTTAATGGTGCCAATAGGGGAACGCTTTATTTATTTGGGAAGGTTAAAGCTGGGAATTCGTATCAGAGTTGTTGTGTTGTTGTGAAGAACATGCAGAGATGTGTCTATGCCATTCCAAGTCACCCTATACATCTCACTGATGAAATGGTGAAACTTGAGAAAGATGTCCAAAAGTCTGCAGATTTCCATAAAAAGCTGCAAGATGCAGTATCTGGTTTAAAGAATGAGTTAGCAAACCATCTTCTGAACCTGAATGTTTCAGGTTTTAGTATGGCTCCCGTTAAGAGGAAGTATGCATTTGAAAGGCTTGAAGTTCCCTCTGGTGAAAATTATGTGCTTAAGATCAGTTATCCATTCAAGGATCCAGTACTTCCTGCGGACCTGAAAGGAGAAAGTTTCTCTGCTCTTTTAGGAACTCATTACAGTGCTCTGGAGCTTTTTCTGGTTAAAAGAAAGATTAAGGGACCTTCATGGCTACAGATTTCAAACTTTTCAAGCTGCCCAACTTCTGAGAGGGAAAGATTTGTTAGCTGGTGCAAATTTGAAGTGATTGTTGACTCCCCTAAAGGCATAAGGGTTTCAACTTCATCAAAAATCAGTTTTGAGATTCCTCCTGTGGTTGTCACAGCAATAAATTTGAAAACTACCATAAATGAAAAACAGAACGTAAATGAGATTGTATCTGCATCTATAGTCTGCTGCAATATGGTTAAGATTGACACGCCTATGTTAGCTTCAGAATGGAAGAGACCTGGAATGCTGACACATTTTACTGTCATTCGTAAAATTGATGGGAATATATTTCCACTGGGGTTCAGTAAGGAGGTTACAGACAGAAACTCAAAATCTGGGTCAAATGTTCTCTGTGTTGAAAGCAGTGAAAGAGCTTTGCTGAATCGCCTGATGACAGAATTACATAAGTTGGATAGCGATGTTCTTGTTGGGCATAATATATCTGGATTTGACCTGGAGGTACTCCTCCATAGATCCCAGGCTTGCAAAGTACCAAGCAACATGTGGTCTAAACTAGGCCGCCTCAAGCGTTCTGCATTGCCTAGGCTTGACAGAGGAAGCAAGGCATTTGGTTCTGGAGCTCGTCCTGTCGTCATGTCTTGTATCTCTGGCCGGCTTCTTTGTGATACATTCTTGTGTTCCCGTGATCTGCTCAAAGAGGTCAGTTATTCATTGACTGAACTTACAAAGACACAGCTGAAGAAGTTTAGGAAGGAAATTGCTCCACATGATGTTCCAAAGAAGTTCCAATCCGCTGAATCCCTAATTGAGCTTATTGAATGTGGTGAAACGGATGCATGGTTGTCCATGGAACTCATGTTTCATTTGAGTGTTCTTCCTCTCACTCGCCAGCTGACAAATATTAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGGGCACAAAGAGTGGAGTTTCTTTTGTTGCATGCTTTCCATGCAAAGAAGTATATGGTGCCGGACAAATTTTCAAACTATGAAAAAGAAATAAAATTGAACAAACGCAAAGTAGCTAATGGTGTTGAGGATAGCAACTTAGAAGAAGCAGATGGTGATGAGGCAAACTATGATAATGATGCTGCCGATACTGATAATAAGAAAAGCAAAAAGGCTCCTTCTTATGCTGGAGGTCTGGTATTAGAACCAAAGAAGGGTCTATATGACAAATATATTCTACTTCTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAATATAATATCTGCTTTACCACTGTTGAAAGATCTCAAGGAACATCATTTTCTCGTTTACCATCCAGTCTAGAAAATGGGGTCTTGCCGGAGTTGTTGAAAAATCTGGTTGAGAGGAGGAGGTTGGTAAAAAAGTGGATGAAGAAAGCATCTGGTCTTAAAGTGCAGCAACTGGACATTCAGCAGCAAGCATTGAAGCTTACTGCAAACAGTATGTATGGATGCCTTGGATTTTCCAATTCAAGATTTTATGCAAAGCCAATTGCTGAACTTATAACGCTACAAGGAAGGGAGATCCTGCAGAGTACTGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTCATATATGGTGATACTGATTCAATAATGATATACAGTGGTCTAGATGATATTGCAAAAGCAAAAGCAATGGCTTCGAAAGTTATTCAAGAGGTCAATAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGGATGCTACTACTCAAGAAAAAGAAATACGCAGCTGTGAAAGTGCAGTTCAATGATGATGCCCCATATGAGGTTATTGAACGTAAAGGTCTTGATATTGTCCGCCGGGATTGGAGCTTACTAGCTAAAGAATTGGGTGATTTTTGCTTGACTCAAATTTTGTCAGGAGGTTCATGTGAAGATGTCGTTGAATCAATTCACAGTTATCTCAGGCAGGAACAAGAAAAAATGAGGAGCGGACAAGTACCACTGGAGAAATATGTCATCAATAAGACATTGACTAAACCTCCTGAGGCTTATCCTGATGCCAAGAACCAACCACATGTTCTTGTGGCACAAAGAATGAAGCAACAAGGTTACTCCTCTGGTTGTTCTGTTGGTGATACAATCCCTTATATAATTTGCTGTGAGGAGGGCTCTAGTTCAGGTAGTGCAACAGGCATTGCTCAGCGTGCAAGGCATCCAGATGAACTAAAACAAGAGCAAGGGAAATGGCTTATTGACATTGAGTACTATTTGTCACAACAGATTCATCCAGTGATATCACGTCTTTGTGCATCAATCCAGGGAACAAGCCCAGAAAGACTTGCTGACTGTCTAGGGCTTGACTCATCAAAGTTTCAACATAAATCAAGTGAAGCTCCAAGTAGTGATCCTTCAAGCTCACTTTTATTTGCTGCTGATGATGAAGAAAGGTACAGGGAATGTGAGCCACTGGTATTGTGTTGCCCCAGCTGCTCTGATTCGTTCGAATGCCCACCTGTTTTTAAATCGATTTGTTTGTTGGGAAGTGAAAAGATAACCAGTGCAGGCACGGAGGAACCCAGTTACAATTTCTGGCGTAAACTTCGTTGTCCTAAATGCCCGGAAGATGGTGTTGGAAGAATATCTCCTGCAATGCTAACCAATCAGGTCAAAATGCAAGCAGAGAAGTTTGTTTTAATGTACTACAAAGGTTTACTGATGTGTGATGATGAAACGTGTAAGCATACGACACGCAGTATCAACCTTAAGTTGGTGGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGATGCAACGGCCGTCTCCACAGAAAGTACACCGAGGCAGATTTGTACAAGCAGCTTTCGTATTTCTGTCACGTGTTGGATACTTTTTGCAGTATGGAGAAGATGGAGGTTAAATCTAGAATCCCAATTGAGAAAGAGTTGATAAAGATTAGACCAATGGTTGATCTGGCAGCATCCTCGGTACAGAAGTTAAGAGACCGTTGTGCCTACGGTTGGGTGAAGTTGCAGGACTTCGTAGTTTCTGTTTAA 4680 0.4359 MSDEEAAATTAGAGRRRARGPASSARSEALERLKARIRGGPRSDGATPQIRLENPIYDIVEEEDYNALVAKRREEACAFIVDDDGLGYGDEGEEEDWSKAGYSLSSDESDGAENEGRPKRKKVEKKEQNPNQKRTSAALSAAAVGAQRLSSMFTSSTFKKSRDDKAPDSIVDDVLAEFAADETDRERRRRTHPKAISNSNSNLSSATNYAPRVNCVFGSNSSIAAASDLMRGSSLLNTAVNCDVESVRVVSNDVSDLGSEQKKCETVKENEVSIEGSDIGNVFSSENGDASIEQVPSNGHVGEEELVKDSKVEEKPVALKKELFSLNAKLKDEKEDPALSATAGWQAVRNGGAANVNVVDSKEHSEFNLEEDGSLPFYILDAYEEFNGANRGTLYLFGKVKAGNSYQSCCVVVKNMQRCVYAIPSHPIHLTDEMVKLEKDVQKSADFHKKLQDAVSGLKNELANHLLNLNVSGFSMAPVKRKYAFERLEVPSGENYVLKISYPFKDPVLPADLKGESFSALLGTHYSALELFLVKRKIKGPSWLQISNFSSCPTSERERFVSWCKFEVIVDSPKGIRVSTSSKISFEIPPVVVTAINLKTTINEKQNVNEIVSASIVCCNMVKIDTPMLASEWKRPGMLTHFTVIRKIDGNIFPLGFSKEVTDRNSKSGSNVLCVESSERALLNRLMTELHKLDSDVLVGHNISGFDLEVLLHRSQACKVPSNMWSKLGRLKRSALPRLDRGSKAFGSGARPVVMSCISGRLLCDTFLCSRDLLKEVSYSLTELTKTQLKKFRKEIAPHDVPKKFQSAESLIELIECGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEFLLLHAFHAKKYMVPDKFSNYEKEIKLNKRKVANGVEDSNLEEADGDEANYDNDAADTDNKKSKKAPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSQGTSFSRLPSSLENGVLPELLKNLVERRRLVKKWMKKASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMASKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFNDDAPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSYLRQEQEKMRSGQVPLEKYVINKTLTKPPEAYPDAKNQPHVLVAQRMKQQGYSSGCSVGDTIPYIICCEEGSSSGSATGIAQRARHPDELKQEQGKWLIDIEYYLSQQIHPVISRLCASIQGTSPERLADCLGLDSSKFQHKSSEAPSSDPSSSLLFAADDEERYRECEPLVLCCPSCSDSFECPPVFKSICLLGSEKITSAGTEEPSYNFWRKLRCPKCPEDGVGRISPAMLTNQVKMQAEKFVLMYYKGLLMCDDETCKHTTRSINLKLVGDSERGTVCPNYPRCNGRLHRKYTEADLYKQLSYFCHVLDTFCSMEKMEVKSRIPIEKELIKIRPMVDLAASSVQKLRDRCAYGWVKLQDFVVSV 1559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151162g00009 1559 Gene3D - 417 539 - -
Stsc151162g00009 1559 CDD DNA_polB_alpha_exo 589 840 - -
Stsc151162g00009 1559 MobiDBLite consensus disorder prediction 900 930 - -
Stsc151162g00009 1559 FunFam DNA polymerase 589 903 - -
Stsc151162g00009 1559 Gene3D - 1155 1340 IPR042087 -
Stsc151162g00009 1559 NCBIfam DNA polymerase (pol2) 56 1309 - -
Stsc151162g00009 1559 MobiDBLite consensus disorder prediction 83 141 - -
Stsc151162g00009 1559 Coils Coil 1105 1125 - -
Stsc151162g00009 1559 Gene3D - 377 575 - -
Stsc151162g00009 1559 Coils Coil 448 468 - -
Stsc151162g00009 1559 SMART polmehr3 589 1091 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc151162g00009 1559 MobiDBLite consensus disorder prediction 1 28 - -
Stsc151162g00009 1559 Pfam DNA polymerase alpha subunit p180 N terminal 30 97 IPR024647 -
Stsc151162g00009 1559 CDD POLBc_alpha 924 1327 IPR045846 GO:0003887|GO:1902975
Stsc151162g00009 1559 Gene3D DNA Polymerase alpha, zinc finger 1350 1544 IPR038256 -
Stsc151162g00009 1559 Gene3D Palm domain of DNA polymerase 917 1141 IPR023211 -
Stsc151162g00009 1559 FunFam DNA polymerase 989 1038 - -
Stsc151162g00009 1559 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 22 1558 - -
Stsc151162g00009 1559 Gene3D - 589 904 IPR036397 GO:0003676
Stsc151162g00009 1559 MobiDBLite consensus disorder prediction 110 131 - -
Stsc151162g00009 1559 MobiDBLite consensus disorder prediction 182 204 - -
Stsc151162g00009 1559 Gene3D Helix hairpin bin 987 1038 - -
Stsc151162g00009 1559 MobiDBLite consensus disorder prediction 34 53 - -
Stsc151162g00009 1559 Pfam DNA polymerase family B, exonuclease domain 406 783 IPR006133 -
Stsc151162g00009 1559 Coils Coil 1559 1559 - -
Stsc151162g00009 1559 FunFam DNA polymerase 1350 1545 - -
Stsc151162g00009 1559 ProSitePatterns DNA polymerase family B signature. 1079 1087 IPR017964 GO:0000166|GO:0003676
Stsc151162g00009 1559 PRINTS DNA-directed DNA-polymerase family B signature 1024 1036 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc151162g00009 1559 PRINTS DNA-directed DNA-polymerase family B signature 1077 1085 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc151162g00009 1559 PRINTS DNA-directed DNA-polymerase family B signature 948 961 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc151162g00009 1559 FunFam DNA polymerase 1155 1341 - -
Stsc151162g00009 1559 Pfam DNA Polymerase alpha zinc finger 1351 1555 IPR015088 GO:0003887|GO:0006260
Stsc151162g00009 1559 SUPERFAMILY DNA/RNA polymerases 922 1327 IPR043502 -
Stsc151162g00009 1559 Pfam DNA polymerase family B 848 1311 IPR006134 GO:0000166|GO:0003677
Stsc151162g00009 1559 SUPERFAMILY Ribonuclease H-like 474 870 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151162g00009 Stsc-Chr151162 52091 63309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151162g00009 13 1557 Core DNA Replication Machinery Family AT5G67100 60.319 0.0 1825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151162g00009 K02320 - gmx:100798779 2116.27