Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151162g00007 ATGGGGGATGATATCTACAACTATGACAACAATCTCTCATCCTCCTCTTCCTCACACGACGAAATTTCTCTTTTCCTTCGTCAGATTCTCCTGCGTTCCTCATCACAACCTCATCACCAAGAAATCGACGCACCACCACCACCACCACAACAACAACAACACCCTTCTTCTTCTTGCTTCCCGTCAACCTCACACCTTCAAGATGCCAAGATCTCACCACTCGGTTCCAGCTCTACTGCTTTTCTCTCTGCCTCTGCCGTGAAGGGGCACGGATGTAATTCTGCTCCAAATGTTTCTTCTTCTTCCGTAGGAGTCAGTGTGAACGATACTGATGACTATGATTGTGAAAGTGAGGAGGGTGTTGAAGCCTTGGCAGAAGATGTTCCAGCAAAGTCTGTACCTTCTAGGAGTTCATCAAAGAGGAGCAGAGCAGCAGAAGTTCATAACTTGTCAGAAAAGCGAAGGAGGAGTAGGATCAATGAAAAGATGAAGGCCTTGCAAAATCTAATTCCGAATTCTAATAAGACTGATAAGGCTTCAATGCTGGATGAGGCTATTGAATACCTTAAACAGCTTCAACTCCAAGTACAGATGTTGTCAATGAGAAATGGATTGAGTTTGCATCCTATGAGCTTTCCCGAAGGATTGCAGCCTCTACAATTCTCAAGAATGAGTCTGGAGTTCAGTGAAGAAAACAGGGCCATCCCTTTAAACATGACAGAAACTCTGCCTCTGCACCAAGGCAACCCCTTGCACTACGCAGCCAGTCTACCTAACAAACCAGCCATGCCAAATCAATCTTCAGTAACTTACCCTTCATATCTTAACAACTCAGAAGCGCCTTTTGGGATGGAATCGCCAATCCTACCACATACAAAACCACTTCAACCAGGAAGGTTTTCTGAGACGCATAGGGAAGACATACTGTTGCAGCAGCAATCAAATGCAAGCCATTCAGATACCAATCCGTTAGGTGGCTCTCAAGTTGTGAAAGAGTTGGAGACAGGAAACTTGGCCACAGCATCACTCTCCTTTGACTCACAAACATGTGAAGTTAAGGACAACAACCCTCTGCAAACTTGCATTGCTGGAAGAGATCAATCACCATCAGTGATCATAAGGAATAGTTAG 1131 0.4483 MGDDIYNYDNNLSSSSSSHDEISLFLRQILLRSSSQPHHQEIDAPPPPPQQQQHPSSSCFPSTSHLQDAKISPLGSSSTAFLSASAVKGHGCNSAPNVSSSSVGVSVNDTDDYDCESEEGVEALAEDVPAKSVPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMSFPEGLQPLQFSRMSLEFSEENRAIPLNMTETLPLHQGNPLHYAASLPNKPAMPNQSSVTYPSYLNNSEAPFGMESPILPHTKPLQPGRFSETHREDILLQQQSNASHSDTNPLGGSQVVKELETGNLATASLSFDSQTCEVKDNNPLQTCIAGRDQSPSVIIRNS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151162g00007 376 CDD bHLH_AtPIF_like 144 205 IPR047265 -
Stsc151162g00007 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Stsc151162g00007 376 Coils Coil 182 202 - -
Stsc151162g00007 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 203 IPR036638 GO:0046983
Stsc151162g00007 376 MobiDBLite consensus disorder prediction 91 108 - -
Stsc151162g00007 376 FunFam Basic helix-loop-helix transcription factor 138 201 - -
Stsc151162g00007 376 Pfam Helix-loop-helix DNA-binding domain 147 193 IPR011598 GO:0046983
Stsc151162g00007 376 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 15 303 IPR031066 -
Stsc151162g00007 376 Gene3D - 138 202 IPR036638 GO:0046983
Stsc151162g00007 376 SMART finulus 149 198 IPR011598 GO:0046983
Stsc151162g00007 376 MobiDBLite consensus disorder prediction 55 71 - -
Stsc151162g00007 376 MobiDBLite consensus disorder prediction 34 71 - -
Stsc151162g00007 376 MobiDBLite consensus disorder prediction 141 156 - -
Stsc151162g00007 376 MobiDBLite consensus disorder prediction 91 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151162g00007 Stsc-Chr151162 40566 43765 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151162g00007 108 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.446 5.48e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151162g00007 HLH 4.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151162g00007 - - adu:107487805 555.058