Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151162g00004 ATGAACACCGGAATCGAAGGAACGGAGATTATTGTTCAAGCATCACCACTCAGGTCACTCAGATTTATAAATACTCCTTCACCAGCAGATCCTGGCAGTGGCGGAAATAACAACGAGACAACGTTTCTGGAAAGATTTTCTTCCCCAGTTGTTGGCTCTAGGGATGACAACAGAGAGGTTTCTAATAACAATAATAATGGTGCTGCTTCAGTGATCCGCATTATTGAGCCACCAATTGAGGTCAACCTTAATTCTTCCCCGCCTGGGTTTCCTGCCTCACCAAATCGTTTAAACAACCCCATGGGCAGTGATATTGACGTAACAAATTTAGGAATCAACAATAACAATAACCGCCAAAATGACGTGTCACTCAATTTATCGTTACACCCGTCTGGGGGTGAAGGCGGCGGCTCTTTTGGTGGCGGAGCAACGGAACAAGCTGCGGGTGGAAATGGTGGCTTGACCACCCTTCGGAATACTACAACTACTGCTGCTACTGCTGCTGCTGCTGCGAGGCGTATGAAAAGAACTGCACCCGATTATCCTCGCCGAGAGTTGACGGTGGTGGGTGAGAGCTCATCACGTGGTGGTGGTGGTGGTGGTGGTGGTTCTGTACCTCAAGCTATGGCAGCTCCGAAGCGGCGCGCCACCGCGAATGAAAGTGCTGGAGTGCACATTTCATCATCATCATCCACCTGCACTTGTACTCCTGCTCCAACTTGCCCTCTCCATGGTGGTTCCAATAATAATACTAATAATAATAACAATAATAATTCTTCATCATCATCATCCCGGGAACGAAACCGTCAAACTACTACTAACAACAACAGCAACAACAATAACAACAATGGTGTTGTTCTTGGTGGTTCTTCTTCTAGTCCATCAGCAGGAGGGCCAGTTTCTGAGTTGCAACAAGCTTTTCGATCTGGGACAAGCTTTCAAGGCCTTCAACCTAATAATCATTATCATATGGTTACTACTACTACTGTTCCTAGTAATGATTTCAATTTTAATCCTCTTATTAACAATCCAGAACTTGATCTTATGATCATTGATAGTACCATTCCTTTGTTGGGTAACCACCACCACCACCACCATCTCCACCATGGCGACCACTTCCCGCCGCCAGTTACTTCGTTTTACCACCATGGCCATCAATGTTGTTACTTCGACACTCCTTATCCATTCGGCCCTGTCTCAACAATCACTCACGTGGACCATCTTCCTCCTCATCGTCACTTCGCTGCCTCCTCTTCTTCTTCTCCTCCCCCTCCTCCCCCTCTTCCCTGGACCAGCGTCGTTAGGCCAAGGGCTATTCCCTCTCTGTCTGTCACTCACCGACGCGGATCCGGAGGAGGAGGAGGAGGTAGTAGTGAAGCTAGCAACATCATCATCAGAAGCAATAGTCCTTCTCCTTCTTATGGAAGAAGGGGAGGAATAATCAATTATGTGACTCAGAATCTTGGAAACTCACCATCATCATCAAGCATGTACTCTGCTAGCTCTCTTTCGAATCAACTACTGGGAAGCCTTGTGGAAAATGCTGGTAGTCCTTCTTCTGGATCTGGTGCTGCTCAAAATACAGTTGGAGCTGTTCCTGCATTTCAGCACCTGTCAAGCGTTGCTCGTGCATGGATTCAAAGGCTGAACGCTCATGATGAAACCTTGATGAGGGCGTCACCGTCTTCTGCTACTGCTGAGGATCCTTCTAGCACTCGCCAAAGGGCATTGCGAGCATCTGTTGCTGACACCCATAATTTGCCTACTTTTTCTGCTGATTCAAGAAGGCTTAGAGAAGAGATCCGCAGTGCCATTGAACATCTGCGCAGTGGAGGCTCCGTTCGCCTCGAGGAACTTTTGATCCTTGATTACTCCATTGTGCTGAACTTGCTTGACACCGTTGAAGAGGTGGATGATGAGTCTCTGGAAATTATTGAGGGGCGGCGAGGCAGTAACCCGGATATAGGACTTACAGAAAATGAGATTCTTTCATTTATTGGACGGGAGATTTTCCAAACTGCTGGTGAGCAGCCTCAGAACAATGATGCTTGCAGTATATGCCAGGAGGACTATGTTCATGGTGAAGAGCTTGGGAGATTGGATTGTTCGCACAGATATCACCTTTCTTGCATCAAGCAGTGGTTGGTCATCAAGAATAGATGCCCTGCCTGCAAGCAAATGGGACTCACCATCATAGATGTAGATGATGACGACGAGGACTGA 2223 0.4728 MNTGIEGTEIIVQASPLRSLRFINTPSPADPGSGGNNNETTFLERFSSPVVGSRDDNREVSNNNNNGAASVIRIIEPPIEVNLNSSPPGFPASPNRLNNPMGSDIDVTNLGINNNNNRQNDVSLNLSLHPSGGEGGGSFGGGATEQAAGGNGGLTTLRNTTTTAATAAAAARRMKRTAPDYPRRELTVVGESSSRGGGGGGGGSVPQAMAAPKRRATANESAGVHISSSSSTCTCTPAPTCPLHGGSNNNTNNNNNNNSSSSSSRERNRQTTTNNNSNNNNNNGVVLGGSSSSPSAGGPVSELQQAFRSGTSFQGLQPNNHYHMVTTTTVPSNDFNFNPLINNPELDLMIIDSTIPLLGNHHHHHHLHHGDHFPPPVTSFYHHGHQCCYFDTPYPFGPVSTITHVDHLPPHRHFAASSSSSPPPPPPLPWTSVVRPRAIPSLSVTHRRGSGGGGGGSSEASNIIIRSNSPSPSYGRRGGIINYVTQNLGNSPSSSSMYSASSLSNQLLGSLVENAGSPSSGSGAAQNTVGAVPAFQHLSSVARAWIQRLNAHDETLMRASPSSATAEDPSSTRQRALRASVADTHNLPTFSADSRRLREEIRSAIEHLRSGGSVRLEELLILDYSIVLNLLDTVEEVDDESLEIIEGRRGSNPDIGLTENEILSFIGREIFQTAGEQPQNNDACSICQEDYVHGEELGRLDCSHRYHLSCIKQWLVIKNRCPACKQMGLTIIDVDDDDED 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151162g00004 740 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 385 726 IPR045191 GO:0061630
Stsc151162g00004 740 SUPERFAMILY RING/U-box 678 730 - -
Stsc151162g00004 740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 653 728 IPR013083 -
Stsc151162g00004 740 MobiDBLite consensus disorder prediction 455 475 - -
Stsc151162g00004 740 MobiDBLite consensus disorder prediction 221 302 - -
Stsc151162g00004 740 ProSiteProfiles Zinc finger RING-type profile. 684 725 IPR001841 -
Stsc151162g00004 740 MobiDBLite consensus disorder prediction 116 159 - -
Stsc151162g00004 740 MobiDBLite consensus disorder prediction 444 476 - -
Stsc151162g00004 740 Pfam Ring finger domain 683 725 IPR001841 -
Stsc151162g00004 740 MobiDBLite consensus disorder prediction 557 583 - -
Stsc151162g00004 740 SMART ring_2 684 724 IPR001841 -
Stsc151162g00004 740 MobiDBLite consensus disorder prediction 172 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151162g00004 Stsc-Chr151162 23367 28084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151162g00004 596 729 C3H Transcription Factor Family AT2G15530 34.694 2.76e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151162g00004 - - adu:110280903 479.944