Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151161g00007 ATGGGACTCGACAGAGGCATCCTCGTGTTCGATTTGGAAAAGTACATCTGTATAACAATTATACCNNNNNNNNNNATATATGCGGCTTGTGCAAGTGTGGAGTCCCAGATATACTCTCAACATAATATTTATGAAGCCGGGCAGAAGAAGGTGGCATTCAAGTACCTTTCTGAGAAGGCAGTAGATAAGGGAGAAGATGCAAGTGGCCACATAATATCCGAAGGAGATTTGTTTATAAATGGAGCACAATCAGGGTTAATGGCATCTAATAATCATGCATGTAACAATTTTCATCCTAAGGAACACTATCCCACATGGACAGTAGAACCTCCTTCAAATGATCTAAAACAGGTTCTTCAGCATTGCACTGGATGGCAATCTATAGCGAGGCCATCGGACCAAGCAGTCAAACATGGTGCTCATGGTGAACCAGTACCCATTTATCCATTCCAAACTCACAGCATGGTAGCCAGTTTTCCTTATGAACGAGCTGACTCCACCCTCCGAGCACTCGCTGGCCTGGCCGAGGGATTTGGCCGCTCTGCCATTGGTGGTCTTCATGGTCCCCTTTATCATGTCACAACTCTAGCAGATGATGGACCGGGGTCGCTGCGTGACGCATGTCGTAGAAAGGATCCTTTATGGATTGTATTTCAGGTTTCAGGCACAATTCATCTGTCTTCATTTTTGAGTGTATCGTCTTATAAGACCATCGATGGCCGAGGCCGAAGGATTAAACTCACTGGAAAAGGATTACGGCTGAAGGAATGTGAGCATGTTATAGTTTGTAATTTAGAGTTTGAAGGAGGTAGAGGGCCTGATGGTGATGCCCTTCAGATCAAGCCTAATTCCAAGCACATATGGATAGATCGTTGCAGCCTCAGTGATTTCGATGATGGACTCATCGACATCACCAGAGAAAGCACAGATATTACCATTTCAAGGTGTCATTTTGCTAAGCACAACAAAACAATTCTCATTGGAGCAGATCCCACACATGTTGGAGATAGGTGCATAAGGGTCACCATTCATCACTGCTTTTTCGATGAGACTCGACAGAGGCATCCTCGTGTTAGATTTGCAAAAGTACATCTTTACAATAATTACAGCAGAAACTGGGGTATATATGCTGTTTGTGCAAGTGTGGAATCCCAGATATTCTCGCAACATAATATCTATGAAGCAGGGCAGCAGAAGGTGGCATTTAAGTATCTTTCTGAAAAGGCAGCGGACAAGGGAGAGGAAGCAAGTGGCCACATAATTTCTGAAGGGGACATGTTTATAAATGGAGCACAATCAGGGCTAATCACATATAACAACAATGGAATGAAGATTTTTCATCCAAGTGAATATTATCCCACTTGGACAGTAGAACCTCCTTCAGATAATCTAAAGCAGGTTCTTCAGTACTTCACTGGATGGCAATGTATTGCTAGGCCAGAAGATTGA 1449 0.432 MGLDRGILVFDLEKYICITIIPXXXIYAACASVESQIYSQHNIYEAGQKKVAFKYLSEKAVDKGEDASGHIISEGDLFINGAQSGLMASNNHACNNFHPKEHYPTWTVEPPSNDLKQVLQHCTGWQSIARPSDQAVKHGAHGEPVPIYPFQTHSMVASFPYERADSTLRALAGLAEGFGRSAIGGLHGPLYHVTTLADDGPGSLRDACRRKDPLWIVFQVSGTIHLSSFLSVSSYKTIDGRGRRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDGDALQIKPNSKHIWIDRCSLSDFDDGLIDITRESTDITISRCHFAKHNKTILIGADPTHVGDRCIRVTIHHCFFDETRQRHPRVRFAKVHLYNNYSRNWGIYAVCASVESQIFSQHNIYEAGQQKVAFKYLSEKAADKGEEASGHIISEGDMFINGAQSGLITYNNNGMKIFHPSEYYPTWTVEPPSDNLKQVLQYFTGWQCIARPED 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151161g00007 482 Gene3D - 161 462 IPR012334 -
Stsc151161g00007 482 PRINTS Pollen allergen Amb family signature 229 245 IPR018082 -
Stsc151161g00007 482 PRINTS Pollen allergen Amb family signature 376 395 IPR018082 -
Stsc151161g00007 482 PRINTS Pollen allergen Amb family signature 174 191 IPR018082 -
Stsc151161g00007 482 Pfam Pectate lyase 230 392 IPR002022 -
Stsc151161g00007 482 SMART amb_all 201 399 IPR002022 -
Stsc151161g00007 482 SUPERFAMILY Pectin lyase-like 25 131 IPR011050 -
Stsc151161g00007 482 SUPERFAMILY Pectin lyase-like 173 476 IPR011050 -
Stsc151161g00007 482 PANTHER PECTATE LYASE 18-RELATED 164 437 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151161g00007 Stsc-Chr151161 37602 44245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151161g00007 196 482 Polysaccharide Lyase AT3G55140 73.171 6.02e-161 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151161g00007 K01728 - ecad:122607709 649.432