Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151160g00011 ATGGCTACCGAGACTTCTACCACTGTTCCCATGGAAGAAGAAGAAAAAGAACACCACCAGCAAGAAGAAAACGTCACAGTAACAGTCACACCCACACACCAAAACCCCCACACGCATCAAAACGGCGTCGTTCCTTCCCCTCTTCCTCCGTATCCCATTCTCCCCGACGACAAAATTCTCCTCCCTGTTGAGGTCTGCTTGAAGCCTTCCAGCACTGCTTCCATCCATGAAGTTCGTTCCGCTATCGAAAGGATGCTTGAGAAGAGGAGTTTGAGCTATTGTGATGGTCCCATTCCTCTTCCTATGGACGAAACCTTTCTCATCGATAACGTTGAAAGAATTTGTATTTGTGACACAGATGAAGGGATGCACAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCAGTTGTCCACGTCTTTCAGCTTAGTGAGGAAGGACCATGTGAAGATATAAGCTCTGATGGCAACACTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAGGAATTTGATGGCATGTGGGAAAGTTTAATATTCGAATCTGGTCTAAAGCAAAGGTTGTTACGTTATGCAGCTAGTGCTTTGCTCTTTACTGAAAAGGGTGTTGATCCTTTCCTTGTTTCATGGAATCGCATAATTCTTCTACATGGACCCCCTGGGACTGGAAAGACTTCATTATGTAAAGCATTAGCTCAGAAATTATCGATTCGATTCAATTCAAGATTCCCAGAGTCCCAGCTTATTGAAGTGAATGCACATTCTTTATTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTTGCAAAACTTTTCCAGAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTAGTATTTGTTTTGATTGATGAAGTAGAAAGCCTTGCTGCGGCTAGAAAAGCTGCTTTATCTGGTTCAGAACCTTCTGATTCTATTCGGGTTGTAAATGCATTATTAACTCAGATTGACAAGTTAAAATCATCTCCAAATGTGATAATTCTAACTACATCCAACATAACCTCTGCTATTGATATTGCTTTTGTTGATCGAGCTGATATTAAAGCATATGTTGGCCCCCCAACACTTCAAGCTCGGTATGAAATATTAAGGTCTTGCCTGCAGGAATTGATGCGTACTGGGATCTTAACTAGTTTACAGGGTTGTGATAACATCACACTTCCAAGTTATGCCAGTGCAAAGGATAGATCGAGTGCACCAGATTTTCATGAGGCCGCCGCACCCATGCAACTATGCAAGCAACTTCTTGAAACTGCAGAGGCGTGTGAGGGAATGAGTGGGAGGTCATTGAGAAAGCTTCCATTTTTGGCTCATGCTGCGCTTGCCAATCCTTTTGATTGCAATCCTATTAAGTTCTTATGTACAATGATTGAAACGGCGAAGAGGGAGCGTTCTGAACTTCCTGACTAA 1431 0.4249 MATETSTTVPMEEEEKEHHQQEENVTVTVTPTHQNPHTHQNGVVPSPLPPYPILPDDKILLPVEVCLKPSSTASIHEVRSAIERMLEKRSLSYCDGPIPLPMDETFLIDNVERICICDTDEGMHNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGNTSSFNEWILPAKEFDGMWESLIFESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRFPESQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQIDKLKSSPNVIILTTSNITSAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELMRTGILTSLQGCDNITLPSYASAKDRSSAPDFHEAAAPMQLCKQLLETAEACEGMSGRSLRKLPFLAHAALANPFDCNPIKFLCTMIETAKRERSELPD 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151160g00011 476 MobiDBLite consensus disorder prediction 9 23 - -
Stsc151160g00011 476 FunFam pachytene checkpoint protein 2 homolog 154 376 - -
Stsc151160g00011 476 Pfam ATPase family associated with various cellular activities (AAA) 214 359 IPR003959 GO:0005524|GO:0016887
Stsc151160g00011 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 443 IPR027417 -
Stsc151160g00011 476 CDD RecA-like_Pch2-like 160 358 - -
Stsc151160g00011 476 SMART AAA_5 210 362 IPR003593 GO:0016887
Stsc151160g00011 476 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 23 473 IPR044539 -
Stsc151160g00011 476 MobiDBLite consensus disorder prediction 1 23 - -
Stsc151160g00011 476 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 328 342 IPR001270 GO:0005524
Stsc151160g00011 476 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 214 232 IPR001270 GO:0005524
Stsc151160g00011 476 ProSitePatterns AAA-protein family signature. 332 351 IPR003960 GO:0005524|GO:0016887
Stsc151160g00011 476 Gene3D - 154 377 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151160g00011 Stsc-Chr151160 87304 91852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151160g00011 159 377 Calmodulin-binding Proteins AT3G56690 30.357 3.75e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151160g00011 K22399 - gmx:100795009 762.681