Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151159g00008 ATGGAGGAAAAGCGCAAACAATTAAAACAAAGTGGTAAGGATCTCATTGCATCTTTTCTAGAAACCAAATGTAGCAATAATAGGCTACTTAAGATATATCTGAATGGTCGCGAGCTAGCTGTTTCTTGGGCTCTTTGTGCTGTTTGTCTTGTTGGCCATCTCTCTCATTTCTTTGCGGCCAGGGCACCATGGATCCATGCATTTCACTCTGTTGGGTTTCATGTATCACTGTCTTTGTTTACATTGCTTGGTCCTGGTCGCCAGCTTATCTTTGATGGACTAAAAAGCCTTCTTAAAGGGGCACCAAACATGAACACCTTAGTTGGTCTTGGGGCCATATCATCATTTACAGTCAGTTCGTTTGCTACACTGCTACCAAATTTGGGTTGGAAGGCTTTCTTTGAGGAACCAATTATGCTAATTGCATTTGTCTTGTTAGGAAGGAATCTTGAGCAGAGAGCAAAAATTAAAGCAACCAGTGATATGACAGGACTTCTTAGTTTACTACCATCAAAAGCACGCCTACTTGTTAATAATGGGAAAACGGAAGTTGACTCAATTGTTGAAGTTCCTTCTGACAGTCTTTCTGTTGGAGACCAAATTATTGTGTTGCCTGGAGATCGTATCCCAGCAGATGGAATTGTCAGAGCTGGTAGAAGCACTGTAGATGAGTCAAGTTTCACTGGTGAGCCACTTCCAGTAACAAAATTACCCGGGAGTGAGGTTGCAGCTGGAAGTATAAATCTTAATGGAACTCTTACAATGGAAGTAAGGAGACCAGGTGGTGAGACTGCTATGGGGGACATTGTACGTCTCGTTGAAGAGGCACAAAGCCGGGAAGCTCCAGTACAGCGAGTGGCTGATAAGGTAGCTGGACACTTCACTTATGGGGTGATGGCACTTGCTTGCAGTGTTCTGGTTATTGCTTGTCCATGTGCACTTGGATTAGCCACACCTACTGCTGTGCTGGTTGGAACTTCTTTGGGGGCTACAAGAGGTTTACTGTTGCGTGGTGGAAACATTCTAGAGAAGTTTGCCATGGTAGATACAGTTGTATTTGACAAAACAGGGACCCTCACAGTTGGTCGACCTGTTGTGACAAAAGTTATTGCTCCATCATGTTTACAGAATGAAAATTCAAGCCAAACAGAAGACAATGCATGGTCTGATGTCGAAGTTTTGAGATTAGCAGCTGCTGTAGAATCAAATTCAGTACATCCAGTCGGGAAAGCAATTGTGGATGCTGCTCAGAAAGTTAATTGTACTAATGCTAAGGTTGCAGATGGAACATTCCTTGAAGAACCTGGTTCTGGTGCAGTAGCAACTGTTGATAACAAAAAGGTCTCTGTTGGGACATTGGATTGGATCACTAGGCATGGGGTTAGCAGCAGTATACATGAAGAAGTGGAGGATTCTAAAAATAAATCTGTTGTCTATGTTGGAGTAAACGATACCCTAGCTGGCCTTATTTATTTTGAAGATGAGATAAGGGAAGATGCAAAACATGTTGTTGATGCATTATCTAAGCAAGGTATTGGGGTGTACATGCTGTCTGGAGACAAAAGGAATGCAGCTGAGCATGTTGCATCCCTTGTTGGAATCCCTAAAGAGAAGGTTCTATCTGGAGTGAAACCAGATGGGAAAAAGAAGTTCATAAATGAACTGCAGAAAGATCAGAAGATTGTAGCTATGGTCGGTGACGGAATTAATGATGCAGCTGCCCTGGCCTCTTCACATATTGGTATCGCATTAGGTGGAGGTGTTGGAGCTGCTAGTGAGGTGTCTTCTATTGTACTGATGCGCAACCAGCTCTCACAGCTAGTTGATGCTTTGGAGCTTAGCAGGCTAACCATGAATACTGTAAAACAAAATCTTTGGTGGGCTTTCATATACAACATTGTAGGGATTCCAATTGCGGCTGGTGTGTTATTCCCTATAAATGGAACCATGCTGACTCCATCAATTGCTGGGGCTCTCATGGGGTTGAGTTCCATTGGCGTAATGACCAACTCGTTACTTTTAAGATTCAGATTTTCCGAAAAGCAGAAACAGATACATGACATGTTGCCCAAGACCAAAATCTATATAGATTCTGACCTGGAAAATCAAAACCAAAACCAGAACCAGAAACTGAAATACCGTTATTAG 2148 0.4264 MEEKRKQLKQSGKDLIASFLETKCSNNRLLKIYLNGRELAVSWALCAVCLVGHLSHFFAARAPWIHAFHSVGFHVSLSLFTLLGPGRQLIFDGLKSLLKGAPNMNTLVGLGAISSFTVSSFATLLPNLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSLLPSKARLLVNNGKTEVDSIVEVPSDSLSVGDQIIVLPGDRIPADGIVRAGRSTVDESSFTGEPLPVTKLPGSEVAAGSINLNGTLTMEVRRPGGETAMGDIVRLVEEAQSREAPVQRVADKVAGHFTYGVMALACSVLVIACPCALGLATPTAVLVGTSLGATRGLLLRGGNILEKFAMVDTVVFDKTGTLTVGRPVVTKVIAPSCLQNENSSQTEDNAWSDVEVLRLAAAVESNSVHPVGKAIVDAAQKVNCTNAKVADGTFLEEPGSGAVATVDNKKVSVGTLDWITRHGVSSSIHEEVEDSKNKSVVYVGVNDTLAGLIYFEDEIREDAKHVVDALSKQGIGVYMLSGDKRNAAEHVASLVGIPKEKVLSGVKPDGKKKFINELQKDQKIVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMRNQLSQLVDALELSRLTMNTVKQNLWWAFIYNIVGIPIAAGVLFPINGTMLTPSIAGALMGLSSIGVMTNSLLLRFRFSEKQKQIHDMLPKTKIYIDSDLENQNQNQNQKLKYRY 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151159g00008 715 Gene3D - 343 615 IPR023214 -
Stsc151159g00008 715 PRINTS Copper-transporting ATPase signature 137 156 - -
Stsc151159g00008 715 PRINTS Copper-transporting ATPase signature 89 108 - -
Stsc151159g00008 715 PRINTS Copper-transporting ATPase signature 542 559 - -
Stsc151159g00008 715 PRINTS Copper-transporting ATPase signature 638 652 - -
Stsc151159g00008 715 PRINTS Copper-transporting ATPase signature 335 350 - -
Stsc151159g00008 715 Pfam haloacid dehalogenase-like hydrolase 348 577 - -
Stsc151159g00008 715 SFLD Haloacid Dehalogenase 335 615 - -
Stsc151159g00008 715 NCBIfam heavy metal translocating P-type ATPase 300 674 IPR027256 GO:0006812|GO:0016020|GO:0019829
Stsc151159g00008 715 PRINTS P-type cation-transporting ATPase superfamily signature 588 600 - -
Stsc151159g00008 715 PRINTS P-type cation-transporting ATPase superfamily signature 223 237 - -
Stsc151159g00008 715 PRINTS P-type cation-transporting ATPase superfamily signature 510 520 - -
Stsc151159g00008 715 PRINTS P-type cation-transporting ATPase superfamily signature 565 584 - -
Stsc151159g00008 715 PRINTS P-type cation-transporting ATPase superfamily signature 352 366 - -
Stsc151159g00008 715 PRINTS P-type cation-transporting ATPase superfamily signature 488 499 - -
Stsc151159g00008 715 Gene3D - 154 277 - -
Stsc151159g00008 715 FunFam Copper-transporting ATPase 1, putative 155 277 - -
Stsc151159g00008 715 ProSitePatterns E1-E2 ATPases phosphorylation site. 354 360 IPR018303 -
Stsc151159g00008 715 PANTHER ATP7, ISOFORM B 301 676 - -
Stsc151159g00008 715 FunFam Copper-transporting ATPase PAA1 chloroplastic 481 632 - -
Stsc151159g00008 715 SFLD p-type atpase 335 615 IPR044492 -
Stsc151159g00008 715 NCBIfam HAD-IC family P-type ATPase 395 646 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc151159g00008 715 NCBIfam HAD-IC family P-type ATPase 142 374 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc151159g00008 715 CDD P-type_ATPase_Cu-like 37 676 - -
Stsc151159g00008 715 FunFam Copper-transporting ATPase PAA1 chloroplastic 363 496 - -
Stsc151159g00008 715 SUPERFAMILY Calcium ATPase, transduction domain A 186 273 IPR008250 -
Stsc151159g00008 715 Gene3D - 363 496 IPR023299 GO:0000166
Stsc151159g00008 715 Pfam E1-E2 ATPase 168 307 - -
Stsc151159g00008 715 SUPERFAMILY HAD-like 350 671 IPR036412 -
Stsc151159g00008 715 NCBIfam copper-translocating P-type ATPase 86 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151159g00008 Stsc-Chr151159 39851 47737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151159g00008 86 675 Primary Pumps ATPases AT1G63440 37.188 6.32e-116 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151159g00008 K17686 - gmx:100796210 1113.6