Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151159g00005 ATGTCTCACTTCGGAAGGTCAGGACCGCCGGACATCTCCGACACCTACTCCCTCCTTGTACTCAACATCACTTTCCGCACAACAGCCGACGACCTCTTCCCTCTCTTTGACAAGTACGGCAAGGTCGTCGATATCTTCATCCCCAAAGATCGAAGGACTGGCGAGTCTAGGGGTTTTGCCTTTGTGCGTTACAAGTATGCTGATGAGGCTCAGAAGGCCGTTGAAAGGCTTGACGGAAGAATGGTTGATGGTCGGGAAATAACTGTTCAGTTTGCAAAATATGGCCCCAATGCGGAGCGCATTCACAAAGGAAGGATTATTGAATCAATGCCTAGAACAAGGAACAGGTCAAGGAGCCGCAGCCCAAGGAGAAGGTACCGTGATGATTACGGAGACAGGGATTACCGGAGGAGAAGTCGCAGCAGAAGTTATGATAGGTATGAACGTGACAGGTACCGTGGGAAGGACAGAGATTATCGTCGTCGAAGCAGAAGCCGCAGTGCCAGCCCTGATTACAAGAGTCGTGGGAGGGGGCGCTATGACGATGATGATCGTCGTAGTAGAAGCCGGAGCCGATCAGTGGATAGCCGCTCCCCTGCACGTAGTCCTAGTCCTCGAAGGAGTCCATCACCCCACAAGAGTATGTCTCCTGAAAGGAGTGCGTCCCCGAGAAGTCCTAGAGGTGAAAGTCCTGATAATCGTAGCCGTGATGGACAATCTGCCTCACCTCGCAGTGTCTCACCGCGTGGTCGCCCTGATGCTTCACGAAGCCCATCCCCTTGA 783 0.53 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIHKGRIIESMPRTRNRSRSRSPRRRYRDDYGDRDYRRRSRSRSYDRYERDRYRGKDRDYRRRSRSRSASPDYKSRGRGRYDDDDRRSRSRSRSVDSRSPARSPSPRRSPSPHKSMSPERSASPRSPRGESPDNRSRDGQSASPRSVSPRGRPDASRSPSP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151159g00005 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Stsc151159g00005 260 MobiDBLite consensus disorder prediction 122 195 - -
Stsc151159g00005 260 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Stsc151159g00005 260 MobiDBLite consensus disorder prediction 196 228 - -
Stsc151159g00005 260 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Stsc151159g00005 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Stsc151159g00005 260 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 251 - -
Stsc151159g00005 260 SMART rrm2_1 17 90 IPR003954 GO:0003676
Stsc151159g00005 260 MobiDBLite consensus disorder prediction 235 260 - -
Stsc151159g00005 260 Gene3D - 4 104 IPR012677 -
Stsc151159g00005 260 CDD RRM_SRSF2_SRSF8 18 90 - -
Stsc151159g00005 260 SMART rrm1_1 17 90 IPR000504 GO:0003723
Stsc151159g00005 260 MobiDBLite consensus disorder prediction 102 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151159g00005 Stsc-Chr151159 18407 20340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151159g00005 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 9.19e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151159g00005 K12891 - gmx:100778928 286.96