Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151158g00009 ATGGCCAGAGCAACACAAAGATACCGAGGTGTCCGTCAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATCCTGAAAACAAGGATATGGCTTGGAACATTTGAGACAGCAGAAGATGCAGCAAGAGCTTATGATGAAGCAGCAAGATTGATGTGTGGGACAAGAGCAAGAACAAACTTCCCTTACAACCCAAATGCCTCTCATTCAACACCATCAAAGCTTCTCTCTGCTACTTTAACTGCCAAGCTTCACAGGTGTTACATGGCATCACTTCAAATCACTAGGCCTTCATCTCTTCCTTCGCCATTACCTTCTTCTTCGAATGGATTTTCCACTTCATCAAACCAACGTGATGAAAGCGGTGTTCTGTTTTCACCTCAGAAGAGACCACACAAGGAGGAACAATTACAACAACAACAAGAACAATGTTCATCATCTTCATCGGATGGGAATAATTGGGTTATGATGAAGAAGGTTAAAGTGGAGAATAATGATGAAGAGTTTATTAAGCCTCTTGAAGAAGATCACATTGAGCAAATGATTCAGGAGTTGCTTCATTATGGCTCCGTTGAGCTTTGTTCTCTTTAA 597 0.4271 MARATQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASHSTPSKLLSATLTAKLHRCYMASLQITRPSSLPSPLPSSSNGFSTSSNQRDESGVLFSPQKRPHKEEQLQQQQEQCSSSSSDGNNWVMMKKVKVENNDEEFIKPLEEDHIEQMIQELLHYGSVELCSL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151158g00009 198 MobiDBLite consensus disorder prediction 140 154 - -
Stsc151158g00009 198 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Stsc151158g00009 198 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Stsc151158g00009 198 MobiDBLite consensus disorder prediction 99 125 - -
Stsc151158g00009 198 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 141 - -
Stsc151158g00009 198 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Stsc151158g00009 198 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Stsc151158g00009 198 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Stsc151158g00009 198 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Stsc151158g00009 198 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Stsc151158g00009 198 MobiDBLite consensus disorder prediction 99 154 - -
Stsc151158g00009 198 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Stsc151158g00009 198 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151158g00009 Stsc-Chr151158 71423 72315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151158g00009 1 198 AP2-EREBP Transcription Factor Family AT5G25190 59.296 1.44e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc151158g00009 AP2 6.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151158g00009 - - adu:107470449 240.736