Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151157g00001 ATGTCCATGGATCCCACCAAGAAACGCAAGCTAGACGAGAACGGTTTCTCTGCCGCCGCCGCAACCGATGGTGACAATCACCTCATGCTCACACCTGCCGACGCCCGCAAGATCATGGAGCGCTTCACCCCTGACCAGCTCCTCGACATCCTCCAGGACGCCGCCGTCCGCCACGCGGACGTCCTCGCCGCCGTCCGCTCCGTAGCGGATCCCGACGTCTCTCAGCGGAAGCTCTTCATCCGCGGCCTCGGTTGGGACACCACCACCGATGGTCTCCGCAACCTATTCTCCACTTACGGCGACCTCGAGGAGGCTGTCGTGATCCTCGACAAAGCAACTGGCAAATCCAAGGGCTATGGCTTCGTCACCTTCCGACACGTCGATGGAGCACTCCTCGCTCTGCGCGAGCCAAGCAAACGAATTGATGGCCGTGTGACCGTCACGCAGCTTGCAGCAGCAGGAAATTCAGGCGCCACCACTAACGCTGCTGACGTGGCATTGCGAAAGATCTATGTTGCGAACGTGCCGCCGGACCTCCCCGCGGACAAGCTGCTGGCGCACTTCTCGCACTACGGGGAGATCGAGGAAGGGCCGCTAGGGTTCGATAAACAGACCGGAAAATCAAAGGGTTTTGCGCTTTTCGTTTATAAGACTCCTGAGGGGGCACAAGCTGCTTTGATGGAGCCAGTGAAAACGGTGGAAGGGAGGCAGTTAAATTGCAAGCTGGCAATTACCGATGGGAAGCAAGGGAAGCGCGGTGGTGCAGCCCCAGTGGGGCCTGATGGTGTTCAGGGTCACGGTCATGGTCACGGGAATGCTCACGGTCACGGTCACGGTGATGGGATGGGGATGGGGATGGCTCCAGCTTCTGTGCCAGGAACGCTTTCGGGCCAATATGGAGGCCCTGTTGGCGGTTTGGGTTCTTATGGAGGGTTTGGAGGTGGGCTTCAGGGTCAGCCTCCGATGGGGAGTCATCCGCTGAATTCTTCCGTTGGTGGGCTAGGCTCCGTTGGAAATCAGGCTCCCCCAGCGATGGGCGGGGCTGGAGGGTATGGGTCTGGTCTTGGAGGGCATTATGGTGGCTATGGTGGGCCTGGATCTGCAGGCTTCGGTGGAATTGGAGGTGGGGCCGCAGCTGGTGGTGCTGGTTTAGGAGGTGGCACAGGTGGTGCCGGCGCTGGTGGACTTGGTGGTGGTTTGGGTGGCTCTGCTTCGATGTATAGATTGCCGGGTTCAGCTGGAATGCCAGGTGCTGGGTATCCTGAAAGTGGACATTACAGTTTGTCAGCTTCGTCTGGTTACCAGAATCAACATCACCCACCTGCTGGAGCCTCTCCTGTTCCTAGGGTTCCTCCTGGTTCTATGTATCCAAATGTGCCTCCTTACTACTGA 1392 0.5884 MSMDPTKKRKLDENGFSAAAATDGDNHLMLTPADARKIMERFTPDQLLDILQDAAVRHADVLAAVRSVADPDVSQRKLFIRGLGWDTTTDGLRNLFSTYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGATTNAADVALRKIYVANVPPDLPADKLLAHFSHYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALMEPVKTVEGRQLNCKLAITDGKQGKRGGAAPVGPDGVQGHGHGHGNAHGHGHGDGMGMGMAPASVPGTLSGQYGGPVGGLGSYGGFGGGLQGQPPMGSHPLNSSVGGLGSVGNQAPPAMGGAGGYGSGLGGHYGGYGGPGSAGFGGIGGGAAAGGAGLGGGTGGAGAGGLGGGLGGSASMYRLPGSAGMPGAGYPESGHYSLSASSGYQNQHHPPAGASPVPRVPPGSMYPNVPPYY 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151157g00001 463 SUPERFAMILY RNA-binding domain, RBD 68 151 IPR035979 GO:0003676
Stsc151157g00001 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 153 IPR000504 GO:0003723
Stsc151157g00001 463 Gene3D - 58 159 IPR012677 -
Stsc151157g00001 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 145 IPR000504 GO:0003723
Stsc151157g00001 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 237 IPR000504 GO:0003723
Stsc151157g00001 463 Gene3D - 160 285 IPR012677 -
Stsc151157g00001 463 PANTHER GEO13361P1-RELATED 59 348 - -
Stsc151157g00001 463 MobiDBLite consensus disorder prediction 426 463 - -
Stsc151157g00001 463 SMART rrm1_1 77 149 IPR000504 GO:0003723
Stsc151157g00001 463 SMART rrm1_1 169 241 IPR000504 GO:0003723
Stsc151157g00001 463 SUPERFAMILY RNA-binding domain, RBD 162 275 IPR035979 GO:0003676
Stsc151157g00001 463 MobiDBLite consensus disorder prediction 444 463 - -
Stsc151157g00001 463 MobiDBLite consensus disorder prediction 248 279 - -
Stsc151157g00001 463 FunFam UBP1-associated protein 2C isoform A 59 162 - -
Stsc151157g00001 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 245 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151157g00001 Stsc-Chr151157 5890 9469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151157g00001 164 316 C2H2 Transcription Factor Family AT2G19380 32.609 8.67e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151157g00001 K12741 - qsa:O6P43_001025 525.013