Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151156g00011 ATGCAGCGATTTAACACTAACCCCAAATACTTTCTTTTTATCTTGTCAACCCGTAGCGGGGGTGTTGGTATCAACCTAGTTGGAGCCGATACTGTTATTTTTTACGATAGTGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGTTGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTACAGATTGATTAGTGAAAGCACCATCGAGGAGAATATCTTACAGAAGGCAAATCAGAAGCGTGCTCTTGATGATCTTGTAATTCAAAGTGGGGGTTATAACACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGCCATAGAACACTTCAAATTAAAAGTATGCTGGAGAAATCCCAGAACAATGGGGAAGTGTCTGTAACTAATGCAGACCTAGAGGCTGCATTAAAATGTGTGGAAGATGAAGCAGATTATAATGCATTGAAGAGAGTTGAAGAGGAAGATGCTGTTGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAGTATGGAAATGAAGATGATTTGAAGGATGATGAGCCTGCTGAATTTGGTGAATCTGTGTCCAACTTAAGTAAACAGAACGCAGTAATGTCAAATGGAGATCCCAAGGAAGATGTAATAGCGTCAGTTACTTTAAAAGAAGACGACGTTGACATGTTGGCCGATGTAAAACAGATGGCTGCAGCTGGGCAAGCTATCTCTGCCTTTGAGAATAAGTTACGCCCTATTGATCGTTATGCCATTCGTTTTCTGGAGCTTTGGGATCCAGTTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACGGAATGGGAGTTGGATCGCATTGAAAGGTACAAGGATGAGATGGAAGCTGAAATTGATGAAGATGAAGAACCTCTTGTATATGAAAAGTGGGATGCTGATTTTGCAACTGAGGCATATCGACAACAAGTAGAGACATTGGCTCAACATCAGTTAATGGAGGAACTAGAATATGAAGCTAAGCAGAAAGCAGAAGCTGAGGAAGAAAATTGCAATTCTAAAAAGACTCCAGGTGATTCAAAGCCCAAATCAAAAAAGAAACCCAAGAAAGCAAAGTTTAAATCTCTGAAGAAAGGATCTCTAACCTCTGGCACAAGATCTGTAAAAGAAGAGCCACAGGCAGAGCCAATGACTATAGATGATGATGTTATAAGTAGTCTTGCTCTTGTATCACCAAATTCATCTATGCAGAAAAAACGGAAGAACCCTAAATTTACAAGTGATGGTGAAGAAGAAAAGAGATCAAAGAAGTCAAAAAAATCCAAAAGGGATCTTCCTGATGTTTTTGCTTCAGATTTAGATTCCAATATGCAGGATGAAAACACAGAGGCTCTGGTTGAGAATGAACAGAAAACTGCAAGCAGAAATAAAATGGGAGGAAAAATATCCATCACTCCAATGCCAGTGAAATGGATCTTGATGATAAAACCAGAAAAAATGAAAAAAGGAAATCTTTGGTCCAAAGATTGCATCCCACCAGCTGATACTTGGTTACCTCAGGAAGATGCGGTGTTATGTGCAGTTGTTCATGAATACGGTTCTAACTGGAGTTTGGTTAGTGAAACGCTTTATGGCATGACTGCTGGTGGGGCATACCGGGGAAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTTAGAGAATTATTCCAGAAATATGTCTTATACTCAGTGGATGGCACAAATAATGAGAAGATAAACAATGCTGGTTCTGGAAAGGCCCTTCTTAAGGTTACAGAGGATAACATTCGCATGTTGTTAGATGTTGCTTCTGAGCAACCCAATAGGGAATTGCTACTGCAGAAACATTTTTATGCATTGCTTTCTAGTGTCTGGAAGCTCAAATCACATGTTGACTGGAGGCAAAATCCATCAGCTACCTCTAACGGTCTCTGTTTTGATAAAGGTTTCTTTGGTTCCATTGGCCAGAATTCACAGAATTCCTTGAAGAAATCCTCTGAAAGGATTACTTACGGTAATTTGGTCCAATGCAAGAAGTTAGTAGCTTCTGCTCTTGATGACACCAGAGTTACGCAAGAGAGCGATCAAACCTTACTCTCTAACCGCAGTGAAGACATACCCATGCAAGTGAGTACAGATCAGATGGATATAACACTGGAGTTCCAGAAAGAGGAGAGTGATGCCTTACCTTCATTTCCATCTGTTATAAATTTATCAATACAGGGTACAGAACCCTTGCCATCTGTAGATAAGCAAACAGGAGAAGATGATCACTTTAGAGCTTTTACATCTATTTCTGAGAATCGTTTCAGGGAGGCAGCAAGAGCATGTGAGGAAGACAGTTCAGCATGGGCTTCATCAGTGTTTCCAACAAATGATACAAGATCCAAACCCGGGTCCAGGATACAATCATCGGGAAAGCAGAAGCCTTCTAATACTGACACTGGTAAACCTTCTAAGTCAAAGTCTAAAAGAGCCTTCACGGATCCCAGTGAGACACATCACCAACAGACTGATCCTTCATTCCACGCAATGCCATCACTTAAAGATCTGGGAATTGATCTCAATGCATCATCCACTATGGATGAGATTGGAGTCGATGACTTGCCTAGTAGCAGTCTCCCGTCTAGCCTCGATCTGGAAAATTCATTCGATGAAACGGAGAGTCTTGGAGCAGTCCCACATGATTATGTAGCTGGTTTAATCTCAGACCTTGATGATTGCACAACATTTCCAGACTTCAGCGACATTCGTTAG 2784 0.4109 MQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILQKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLQIKSMLEKSQNNGEVSVTNADLEAALKCVEDEADYNALKRVEEEDAVDNQEFTEEAIGRLEEDEYGNEDDLKDDEPAEFGESVSNLSKQNAVMSNGDPKEDVIASVTLKEDDVDMLADVKQMAAAGQAISAFENKLRPIDRYAIRFLELWDPVIDKTALESEVRIEDTEWELDRIERYKDEMEAEIDEDEEPLVYEKWDADFATEAYRQQVETLAQHQLMEELEYEAKQKAEAEEENCNSKKTPGDSKPKSKKKPKKAKFKSLKKGSLTSGTRSVKEEPQAEPMTIDDDVISSLALVSPNSSMQKKRKNPKFTSDGEEEKRSKKSKKSKRDLPDVFASDLDSNMQDENTEALVENEQKTASRNKMGGKISITPMPVKWILMIKPEKMKKGNLWSKDCIPPADTWLPQEDAVLCAVVHEYGSNWSLVSETLYGMTAGGAYRGRYRHPVHCCERFRELFQKYVLYSVDGTNNEKINNAGSGKALLKVTEDNIRMLLDVASEQPNRELLLQKHFYALLSSVWKLKSHVDWRQNPSATSNGLCFDKGFFGSIGQNSQNSLKKSSERITYGNLVQCKKLVASALDDTRVTQESDQTLLSNRSEDIPMQVSTDQMDITLEFQKEESDALPSFPSVINLSIQGTEPLPSVDKQTGEDDHFRAFTSISENRFREAARACEEDSSAWASSVFPTNDTRSKPGSRIQSSGKQKPSNTDTGKPSKSKSKRAFTDPSETHHQQTDPSFHAMPSLKDLGIDLNASSTMDEIGVDDLPSSSLPSSLDLENSFDETESLGAVPHDYVAGLISDLDDCTTFPDFSDIR 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151156g00011 927 MobiDBLite consensus disorder prediction 790 856 - -
Stsc151156g00011 927 FunFam Photoperiod independent early flowering protein 515 576 - -
Stsc151156g00011 927 SUPERFAMILY Homeodomain-like 517 574 IPR009057 -
Stsc151156g00011 927 Gene3D - 1 162 IPR027417 -
Stsc151156g00011 927 MobiDBLite consensus disorder prediction 176 191 - -
Stsc151156g00011 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 113 IPR027417 -
Stsc151156g00011 927 Coils Coil 331 351 - -
Stsc151156g00011 927 MobiDBLite consensus disorder prediction 174 196 - -
Stsc151156g00011 927 Pfam Helicase conserved C-terminal domain 1 55 IPR001650 -
Stsc151156g00011 927 MobiDBLite consensus disorder prediction 423 451 - -
Stsc151156g00011 927 MobiDBLite consensus disorder prediction 793 826 - -
Stsc151156g00011 927 MobiDBLite consensus disorder prediction 343 361 - -
Stsc151156g00011 927 Coils Coil 280 300 - -
Stsc151156g00011 927 MobiDBLite consensus disorder prediction 872 891 - -
Stsc151156g00011 927 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 96 IPR001650 -
Stsc151156g00011 927 PANTHER HELICASE SRCAP-RELATED 1 823 - -
Stsc151156g00011 927 MobiDBLite consensus disorder prediction 827 841 - -
Stsc151156g00011 927 Gene3D - 515 576 - -
Stsc151156g00011 927 ProSiteProfiles Myb-like domain profile. 519 572 IPR001005 -
Stsc151156g00011 927 MobiDBLite consensus disorder prediction 362 378 - -
Stsc151156g00011 927 MobiDBLite consensus disorder prediction 343 463 - -
Stsc151156g00011 927 CDD SF2_C_SNF 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151156g00011 Stsc-Chr151156 46362 51403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151156g00011 1 82 RAD5 or RAD16-like Gene Family AT1G05120 42.683 3.79e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151156g00011 K11661 - gmx:100794898 1292.33