Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151149g00007 ATGGCGGAGACAATTTCTCCCATGGAAATCGACAGCAACGAAACCCCTGTCTCTTCAAGGACCGACAAGGGCAAGAGCGTCTTTGTCGCTGGAAACACCTCAGGCAATGGCAAGGCCACTCCGCTGACTACTGAGAACAGATTGCCACATCTTCTACTGTATGGTCCACCTGGAACGGGCAAAACTTCGACTATTCTTGCTGTGGCACGTAAACTCTATGGTGCACAGTACCACAATATGATTTTGGAGCTGAATGCCTCTGATGACAGAGGAATTGATGTTGTACGGCAGCAGATTCAAGATTTTGCTAGCACCCAGAGCTTATCATTTGGTGCAAAGGCCTCCGTAAAGTTGGTCTTGCTAGATGAAGCAGATGCTATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAGTATACAAAAAGTACAAGGCTTGATGTTGAAGACAGTGGCCTAGCTGCACTTGTTCGGCTTAGCAACGGTGATATGAGAAAAGCTTTGAACATTCTTCAGTCAACGCATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTACACCTGTGCACTGGAAATCCATTGCCCAAAGATATTGAGCAAATATCTTACTGGCTGCTAAATGAACAATTTTCAGATAGTTTTAAAAGAATACATGAAATCAAGACAAGGAAAGGATTGGCCCTGGTAGACATTGTGAGAGAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCTCCAGATGTCCGAGTACAGTTGATTAATGATTTGGCAGACATAGAGTACAGGTTAAGTTTTGGGTGCAATGACAAGCTTCAGCTTGGTTCAGTAATCGCTACGTTTACTCGAGCTAGATCTGCACTCGTTGCTGCTGCTAAATAG 885 0.4373 MAETISPMEIDSNETPVSSRTDKGKSVFVAGNTSGNGKATPLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEEAVHLCTGNPLPKDIEQISYWLLNEQFSDSFKRIHEIKTRKGLALVDIVREVTMFVFKIKMPPDVRVQLINDLADIEYRLSFGCNDKLQLGSVIATFTRARSALVAAAK 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151149g00007 294 CDD AAA 46 170 - -
Stsc151149g00007 294 MobiDBLite consensus disorder prediction 1 42 - -
Stsc151149g00007 294 SUPERFAMILY post-AAA+ oligomerization domain-like 195 285 IPR008921 GO:0003677|GO:0006260
Stsc151149g00007 294 Gene3D - 195 292 - -
Stsc151149g00007 294 Gene3D - 20 149 IPR027417 -
Stsc151149g00007 294 Pfam Replication factor C C-terminal domain 195 280 IPR013748 -
Stsc151149g00007 294 FunFam Replication factor C subunit 5 195 292 - -
Stsc151149g00007 294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 188 IPR027417 -
Stsc151149g00007 294 Pfam ATPase family associated with various cellular activities (AAA) 51 144 IPR003959 GO:0005524|GO:0016887
Stsc151149g00007 294 MobiDBLite consensus disorder prediction 8 42 - -
Stsc151149g00007 294 SMART AAA_5 47 210 IPR003593 GO:0016887
Stsc151149g00007 294 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 148 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151149g00007 Stsc-Chr151149 34949 39827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151149g00007 1 294 Core DNA Replication Machinery Family AT1G77470 61.995 6.22e-149 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151149g00007 K10756 - gmx:100805231 461.84