Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151149g00006 ATGGCATCGGAGCTTCAATTGCCTCCTGGTTTCCGTTTTCACCCCACCGATGAGGAGCTCGTGATGCACTATCTCTGTCGCAAATGCACTTCTCAAGTAATCGCCGTTCCGATCATAGCCGAGATCGACCTGTACAAATACGACCCGTGGGAGCTCCCTGGCATGGCATCATATGGGGAGAAGGAGTGGTACTTCTTTTCTCCGAGAGATCGAAAGTACCCCAACGGTTCTAGACCAAACCGTGCTGCAGGAACTGGGTACTGGAAAGCAACTGGGGCTGATAAGCCCATTGGTCAACCTAAACCAGTTGGAATTAAGAAAGCTTTGGTTTTTTATTCAGGGAAGGCTCCCAAAGGAGATAAGACTAATTGGATCATGCATGAATACAGACTCGCAGATGTAGATCGATCCATTCGCAAGAAGAATAGCCTCAGGCTGGATGACTGGGTCTTGTGTCGCATCTACAATAAGAAAGGAACAATTGAGAAGCAACCGAGCAGCAGCGTTAGCACCGTGGTGAACACGTCGCTGAACGGGACAATTCACCATGGGATAGGTGAATTGTCGGAGGTCGAAGACAAGAAACCGGACGGGACAATTCACCATGGGATAGGTGAATTCTCGGAGGTCGAGGACAAGAAACCGGACATAGTTCCACATGTCGGCGGCGCAGTACTTCCGCCACATCCTCCTGTGGGGCAGGCTTCGGGAGGGGGTGTGACGATGGACTATATGTACTTCGACAATTCCGATTCGATTCCGAAGCTTCACACGGACTCGAGCTGCTCAGAGCAGGTGGTGTCGCCTGAGTTTGCGCCCGAGGTTCAGAGTGAACCCAAGTTAGTGAACGATTGGGATAGGAACCTCGAAAGTGCGTTTAATTACCTCGATGCCACTATGGCTAACGGTTTCGGGTTCCAGTTTCCGGGTAACAATCAGATGTCGCCACTCCAGGATATGTTCATAAACCTGCAGAACCTGCAGAAACCGTTCTGA 996 0.506 MASELQLPPGFRFHPTDEELVMHYLCRKCTSQVIAVPIIAEIDLYKYDPWELPGMASYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGQPKPVGIKKALVFYSGKAPKGDKTNWIMHEYRLADVDRSIRKKNSLRLDDWVLCRIYNKKGTIEKQPSSSVSTVVNTSLNGTIHHGIGELSEVEDKKPDGTIHHGIGEFSEVEDKKPDIVPHVGGAVLPPHPPVGQASGGGVTMDYMYFDNSDSIPKLHTDSSCSEQVVSPEFAPEVQSEPKLVNDWDRNLESAFNYLDATMANGFGFQFPGNNQMSPLQDMFINLQNLQKPF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151149g00006 331 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Stsc151149g00006 331 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Stsc151149g00006 331 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 248 - -
Stsc151149g00006 331 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Stsc151149g00006 331 FunFam NAC transcription factor 16 161 - -
Stsc151149g00006 331 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151149g00006 Stsc-Chr151149 31244 33378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151149g00006 1 325 NAC Transcription Factor Family AT1G01720 63.363 6.41e-139 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151149g00006 NAM 4.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151149g00006 - - gmx:732553 462.611