Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151149g00004 ATGGAAGGTGATGATGGAAAACAACCAAACCACAAAGAACCATGCAATAACAATAGTAGCAATACTAATACTAATAATAATGAATTGTTTGAGCAAGAGAACTTTGATTATATTCTTGCAATTAGCTTGCAAGAACAAGAGGGAGGATCAACATACACAACCCTAGCAACAATTGTAAGCGAAGATGATGAAGAAGACGATGATGCAGATGAATCCTCCTTAGATGATGAAGAAGAGGACGACGATTCTGAGTATTATTTAGAAAGCCAAGACTTTGAGGAGTCAGAAACTCAGTTCCTTGAAGGTGAAGGAAGCAACTATGATGACGAGGTAGAAGAAGAAGAGATGGAAGAGGATGAAATTGATCCAGATGAAATGTCCTATGAAGAGTTGCTTGAGTTGGGAGAGATCATAGGAGAAGAGAATAGAGGATTATCAGAAAATGAAGTGTCTTCTTGCTTATACCCTTACACTTGCAAATCTAATAGTGTTGATGGAAGAATTGATCGGTGTGTGGTTTGTCAGTTAGAATATGAAGAAGGTGAATCAATGGTGGCACTTGAATGTAAGCACCCTTTTCATGAAGATTGCATAACCACATGGCTTCAGATTAAGAAGGTTTGTCCAATTTGTGGTAATGAAGTTTCAACTAACAATAATAATACCAACAAGGTAATGCCTAAGAATGAATAG 693 0.3709 MEGDDGKQPNHKEPCNNNSSNTNTNNNELFEQENFDYILAISLQEQEGGSTYTTLATIVSEDDEEDDDADESSLDDEEEDDDSEYYLESQDFEESETQFLEGEGSNYDDEVEEEEMEEDEIDPDEMSYEELLELGEIIGEENRGLSENEVSSCLYPYTCKSNSVDGRIDRCVVCQLEYEEGESMVALECKHPFHEDCITTWLQIKKVCPICGNEVSTNNNNTNKVMPKNE 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151149g00004 230 MobiDBLite consensus disorder prediction 12 29 - -
Stsc151149g00004 230 ProSiteProfiles Zinc finger RING-type profile. 171 211 IPR001841 -
Stsc151149g00004 230 SMART ring_2 171 211 IPR001841 -
Stsc151149g00004 230 MobiDBLite consensus disorder prediction 59 112 - -
Stsc151149g00004 230 MobiDBLite consensus disorder prediction 45 112 - -
Stsc151149g00004 230 Pfam Ring finger domain 170 211 IPR001841 -
Stsc151149g00004 230 MobiDBLite consensus disorder prediction 1 29 - -
Stsc151149g00004 230 SUPERFAMILY RING/U-box 170 218 - -
Stsc151149g00004 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 228 IPR013083 -
Stsc151149g00004 230 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 31 216 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151149g00004 Stsc-Chr151149 10777 11541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151149g00004 118 215 C3H Transcription Factor Family AT3G63530 50.495 1.76e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151149g00004 K19045 - gmx:100526881 199.519