Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151148g00007 ATGATGAGCAACATTAGAGGAGGATCAATAGATCAAGAAACTCCTAAGCCTACTCCTCCTGCTGCTAGACCTCCAGAGAAGAGACAGAGAGTTCCATCTGCCTACAACCGCTTCATCAAGGATGAGATCCAACGTATCAAGGCTGGGAATCCTGATATAAGTCATAGAGAAGCCTTCAGTGCTGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGCCAGGAAGCTGAGGACGTGCTTATGAAAGATGGGTTTTTCACTCCGGCAAATGTAGGTGTCTCTCCCTACTAG 339 0.4631 MMSNIRGGSIDQETPKPTPPAARPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEAEDVLMKDGFFTPANVGVSPY 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151148g00007 112 Gene3D High mobility group box domain 10 97 IPR036910 -
Stsc151148g00007 112 MobiDBLite consensus disorder prediction 1 33 - -
Stsc151148g00007 112 CDD HMG-box_SF 30 66 - -
Stsc151148g00007 112 PANTHER PROTEIN YABBY 6-RELATED 12 88 IPR006780 GO:0007275
Stsc151148g00007 112 SUPERFAMILY HMG-box 14 70 IPR036910 -
Stsc151148g00007 112 Pfam YABBY protein 11 76 IPR006780 GO:0007275
Stsc151148g00007 112 FunFam Axial regulator YABBY 21 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151148g00007 Stsc-Chr151148 74321 77221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151148g00007 13 112 C2C2-YABBY Transcription Factor Family AT2G45190 78.846 3.18e-52 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Stsc151148g00007 YABBY 1.1e-39 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151148g00007 K25796 - gmx:100781267 195.282